BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0118500 Os04g0118500|009-125-A06
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0118500  Similar to Peptidyl-prolyl cis-trans isomerase...    94   3e-20
Os04g0663800  Similar to Peptidyl-prolyl cis-trans isomerase...    65   1e-11

>Os04g0118500 Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8)
           (Rotamase Pin1) (PPIase Pin1) (MdPin1)
          Length = 106

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 65  WGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 106
           WGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA
Sbjct: 65  WGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 106



>Os04g0663800 Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8)
           (Rotamase Pin1) (PPIase Pin1) (PIN1At)
          Length = 72

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 33/42 (78%)

Query: 65  WGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIILRTA 106
            G F R +MQK FE A  ALKVGE+SD VDTDSGVHIILRTA
Sbjct: 31  LGPFERGKMQKAFEKAVLALKVGEISDVVDTDSGVHIILRTA 72



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,266,013
Number of extensions: 28086
Number of successful extensions: 38
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)