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Os04g0118500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (MdPin1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.3 (0.0152) R2 : 0.575
β1 : 1.22 (0.0556) R2dD : 0.462 R2D : 0.266
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.51 (0.0324) R2dN8 : 0.309 R2N8 : 0.113
σ : 0.285
deviance : 37.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.04 0.24 13.4 0.446 0.289 -0.103 -0.197 3.88 0.348 24 29.6 1652 -- --
28.43 0.248 13.3 1.31 0.283 0.237 -0.0861 -- 0.48 0.464 31.5 5738 -- --
26.2 0.238 13.4 0.453 0.29 -0.102 -- 3.9 0.348 0.0386 29.59 1656 -- --
28.33 0.248 13.3 1.27 0.282 0.27 -- -- 0.464 0.112 31.86 5758 -- --
31.39 0.261 13.4 0.494 -- -0.12 -- 4 0.355 -- 29.5 1954 -- --
32.39 0.267 13.3 1.2 0.269 -- -0.237 -- 0.505 23.8 -- -- -- --
32.63 0.268 13.3 1.21 0.27 -- -- -- 0.506 23.8 -- -- -- --
33.04 0.268 13.3 1.31 -- 0.306 -- -- 0.485 -- 32.01 5964 -- --
70.44 0.391 13.3 -- 0.286 0.094 -- -- 0.375 0.282 33.82 7077 -- --
37.23 0.285 13.3 1.22 -- -- -- -- 0.51 -- -- -- -- --
71.04 0.394 13.3 -- 0.286 -- -- -- 0.372 0.0979 -- -- -- --
51.03 0.333 13.3 -- -- -0.673 -- -- 0.394 -- 35.48 47520 -- --
76.19 0.407 13.3 -- -- -- -- -- 0.375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.00 precipitation 0.1 43200 > th dose dependent rect. 17 5
2 24.06 wind 9.0 43200 > th dose dependent rect. 14 17
3 24.09 precipitation 0.1 43200 > th dose dependent rect. 15 4
11 24.29 precipitation 0.1 43200 < th dose independent rect. 17 2
12 24.29 precipitation 0.1 43200 < th dose dependent rect. 17 2
13 24.30 wind 9.0 43200 < th dose independent rect. 14 23
15 24.33 wind 7.0 43200 > th dose independent rect. 20 19
17 24.34 precipitation 0.1 43200 > th dose independent rect. 17 2
18 24.35 precipitation 0.1 43200 > th dose dependent rect. 14 7
19 24.37 wind 9.0 43200 < th dose independent rect. 17 22
20 24.37 wind 9.0 43200 > th dose dependent rect. 14 4
23 24.38 wind 7.0 43200 < th dose independent rect. 19 20
26 24.39 wind 9.0 43200 > th dose independent rect. 14 23
28 24.40 wind 7.0 43200 > th dose independent rect. 3 12
29 24.40 wind 9.0 43200 > th dose independent rect. 17 20
35 24.43 wind 7.0 43200 < th dose independent rect. 3 12
37 24.43 wind 9.0 43200 < th dose independent rect. 17 20
39 24.43 wind 7.0 43200 > th dose dependent rect. 17 22
40 24.44 wind 9.0 43200 < th dose independent sin 12 NA
45 24.46 precipitation 0.1 43200 < th dose independent rect. 17 4
51 24.46 precipitation 0.1 43200 < th dose dependent rect. 17 4
52 24.47 wind 9.0 43200 > th dose independent sin 12 NA
54 24.48 temperature 20.0 14400 > th dose independent rect. 21 2
59 24.49 temperature 20.0 14400 > th dose independent rect. 20 5
61 24.49 wind 9.0 43200 < th dose independent rect. 14 18
64 24.50 precipitation 0.1 43200 > th dose independent rect. 17 4
65 24.50 wind 9.0 43200 < th dose independent rect. 17 13
69 24.50 wind 7.0 43200 > th dose dependent rect. 20 19
82 24.53 wind 9.0 43200 > th dose independent rect. 14 18
90 24.55 precipitation 0.1 43200 > th dose dependent rect. 20 1
98 24.57 temperature 20.0 14400 < th dose independent rect. 21 2
103 24.57 wind 9.0 43200 > th dose dependent sin 13 NA
111 24.59 wind 9.0 43200 < th dose independent rect. 20 22
115 24.60 wind 9.0 43200 > th dose independent rect. 17 14
166 24.67 wind 9.0 43200 < th dose independent rect. 9 23
172 24.68 wind 9.0 43200 < th dose independent rect. 3 20
182 24.69 wind 9.0 43200 < th dose independent no NA NA
206 24.71 wind 7.0 43200 > th dose independent sin 4 NA
207 24.71 wind 7.0 43200 < th dose independent rect. 9 5
245 24.75 wind 7.0 43200 < th dose independent sin 4 NA
253 24.76 wind 9.0 43200 > th dose independent rect. 14 1
324 24.82 wind 7.0 43200 > th dose dependent rect. 14 23
346 24.85 precipitation 0.1 43200 < th dose independent rect. 20 1
357 24.85 precipitation 0.1 43200 < th dose dependent rect. 20 1
359 24.85 wind 5.0 43200 > th dose dependent rect. 3 12
375 24.87 wind 9.0 43200 < th dose independent rect. 14 10
383 24.88 precipitation 0.1 43200 > th dose independent rect. 20 1
385 24.88 wind 9.0 43200 < th dose independent rect. 14 12
396 24.88 wind 9.0 43200 > th dose dependent rect. 10 20
408 24.89 wind 7.0 43200 > th dose dependent rect. 9 6
422 24.90 wind 7.0 43200 > th dose dependent rect. 9 23
424 24.91 wind 9.0 43200 < th dose independent rect. 17 1
433 24.91 wind 7.0 43200 > th dose dependent no NA NA
441 24.91 wind 7.0 43200 > th dose dependent rect. 1 23
459 24.92 wind 7.0 43200 > th dose dependent rect. 23 23
461 24.93 wind 9.0 43200 > th dose independent no NA NA
467 24.93 wind 9.0 43200 > th dose independent rect. 1 23
468 24.93 wind 9.0 43200 > th dose independent rect. 3 23
469 24.93 wind 9.0 43200 > th dose independent rect. 9 23
491 24.94 wind 9.0 43200 > th dose independent rect. 3 20
498 24.94 wind 9.0 43200 > th dose independent rect. 7 23
510 24.95 wind 9.0 43200 > th dose independent rect. 14 10
528 24.95 wind 5.0 43200 > th dose dependent rect. 11 3
549 24.96 wind 5.0 43200 > th dose dependent sin 3 NA
584 24.98 temperature 10.0 1440 > th dose dependent rect. 17 2
589 24.99 temperature 20.0 14400 > th dose independent sin 15 NA
609 25.00 wind 9.0 43200 > th dose independent rect. 12 23
653 25.02 wind 9.0 43200 > th dose dependent rect. 10 16
669 25.03 wind 9.0 43200 > th dose dependent rect. 10 13
691 25.05 wind 9.0 43200 > th dose independent rect. 17 1
735 25.07 radiation 10.0 43200 > th dose independent rect. 8 1
771 25.09 wind 9.0 43200 > th dose independent rect. 14 4
883 25.15 wind 9.0 43200 < th dose independent rect. 17 7
897 25.16 wind 9.0 43200 < th dose independent rect. 14 4
914 25.17 wind 9.0 43200 < th dose independent sin 23 NA
924 25.17 temperature 30.0 1440 < th dose dependent rect. 18 1
934 25.18 wind 9.0 43200 < th dose independent rect. 17 9
964 25.19 wind 9.0 43200 > th dose dependent rect. 14 1