Os04g0663800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At).
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Os04g0663800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.67 | 0.243 | 10.2 | 0.398 | 0.249 | -0.73 | -0.431 | 1.11 | -0.133 | 1.02 | 26.12 | 757 | -- | -- |
| 27.75 | 0.245 | 10.3 | 0.133 | 0.22 | -0.653 | -0.275 | -- | -0.248 | 1.38 | 26.4 | 741 | -- | -- |
| 27 | 0.242 | 10.3 | 0.398 | 0.228 | -0.734 | -- | 1.11 | -0.155 | 0.76 | 26.3 | 748 | -- | -- |
| 28.06 | 0.247 | 10.3 | 0.132 | 0.222 | -0.665 | -- | -- | -0.242 | 1.06 | 26.38 | 741 | -- | -- |
| 29.19 | 0.252 | 10.3 | 0.351 | -- | -0.655 | -- | 1 | -0.211 | -- | 26.6 | 676 | -- | -- |
| 40.93 | 0.3 | 10.3 | -0.0737 | 0.329 | -- | -0.277 | -- | -0.413 | 5.54 | -- | -- | -- | -- |
| 41.09 | 0.3 | 10.3 | -0.0742 | 0.328 | -- | -- | -- | -0.411 | 5.76 | -- | -- | -- | -- |
| 29.95 | 0.255 | 10.3 | 0.112 | -- | -0.584 | -- | -- | -0.262 | -- | 26.4 | 617 | -- | -- |
| 28.51 | 0.249 | 10.3 | -- | 0.222 | -0.652 | -- | -- | -0.261 | 1.24 | 26.4 | 741 | -- | -- |
| 46.67 | 0.319 | 10.3 | -0.064 | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
| 41.24 | 0.3 | 10.3 | -- | 0.327 | -- | -- | -- | -0.403 | 5.77 | -- | -- | -- | -- |
| 30.25 | 0.256 | 10.3 | -- | -- | -0.564 | -- | -- | -0.277 | -- | 26.36 | 612 | -- | -- |
| 46.78 | 0.319 | 10.3 | -- | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 16 | 24.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 34 | 25.70 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 46 | 25.97 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 17 |
| 76 | 26.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 84 | 26.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 107 | 26.72 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 121 | 26.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 141 | 26.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 143 | 26.99 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 162 | 27.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 173 | 27.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 176 | 27.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 222 | 27.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 240 | 27.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 250 | 27.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 19 |
| 270 | 27.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 295 | 27.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 314 | 27.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 319 | 27.37 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 323 | 27.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 331 | 27.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 388 | 27.43 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 399 | 27.44 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 495 | 27.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 496 | 27.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 497 | 27.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 500 | 27.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 502 | 27.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 509 | 27.51 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 510 | 27.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 668 | 27.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 669 | 27.59 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 735 | 27.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 815 | 27.66 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 834 | 27.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 880 | 27.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 925 | 27.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 932 | 27.71 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 936 | 27.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 967 | 27.72 | temperature | 10 | 1440 | > th | dose dependent | sin | 6 | NA |