BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0852900 Os03g0852900|AK100660
(700 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0852900 Similar to Cleavage and polyadenylation specif... 1374 0.0
Os09g0397900 Similar to FEG protein 315 6e-86
Os09g0569400 Beta-lactamase-like domain containing protein 138 2e-32
>Os03g0852900 Similar to Cleavage and polyadenylation specificity factor, 73 kDa
subunit (CPSF 73 kDa subunit)
Length = 700
Score = 1374 bits (3556), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/700 (95%), Positives = 665/700 (95%)
Query: 1 MASSVXXXXXXXXXXXXXKRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC 60
MASSV KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC
Sbjct: 1 MASSVAAAAAPTAGGPPGKRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDC 60
Query: 61 GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 120
GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA
Sbjct: 61 GIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 120
Query: 121 IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG 180
IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG
Sbjct: 121 IYRLLLSDYVKVSKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLG 180
Query: 181 AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR 240
AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR
Sbjct: 181 AAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKR 240
Query: 241 FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV 300
FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV
Sbjct: 241 FTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAV 300
Query: 301 YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF 360
YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF
Sbjct: 301 YQTYINSMNERIRNQFAQSNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLF 360
Query: 361 DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ 420
DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ
Sbjct: 361 DKWCTDKKNSCVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQ 420
Query: 421 TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA 480
TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA
Sbjct: 421 TSTFLDELQPPNIVLVHGEANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMA 480
Query: 481 KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE 540
KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE
Sbjct: 481 KTIGRLAEKVPEAGESVNGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFE 540
Query: 541 VIKYRLKQIYXXXXXXXXXXDVPTLIVHERVTIRLESESYVTLQWSSDPIXXXXXXXXXX 600
VIKYRLKQIY DVPTLIVHERVTIRLESESYVTLQWSSDPI
Sbjct: 541 VIKYRLKQIYESVESSTEESDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVA 600
Query: 601 XXLNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV 660
LNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV
Sbjct: 601 MVLNIGREGPKVVPVEEAVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQV 660
Query: 661 AHLDGRSGGVECENATLRERIKTAFRRIQGAVRPIPLISS 700
AHLDGRSGGVECENATLRERIKTAFRRIQGAVRPIPLISS
Sbjct: 661 AHLDGRSGGVECENATLRERIKTAFRRIQGAVRPIPLISS 700
>Os09g0397900 Similar to FEG protein
Length = 559
Score = 315 bits (808), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 255/448 (56%), Gaps = 17/448 (3%)
Query: 36 LGAGNEVGRSCVYMSFKG-RTVLFDCGIHPAYSGMAALPYFDEI-------DPSTIDVLL 87
LGAG EVG+SCV ++F G + V+FDCG+H + P FD + + I ++
Sbjct: 8 LGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVV 67
Query: 88 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVS-KVSVEDMLFDEQD 146
ITHFHLDH +LPYF E + G V+MT+ TKA+ L+L DY KV E+ + +D
Sbjct: 68 ITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSYED 127
Query: 147 ILRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 205
ILR M K+ +D QT++V+ + Y AGHVLGAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDR 187
Query: 206 HLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGRVLIPAFALGRA 265
HL AA++ + D+ I ESTY +H RE+ F +H VS GG+VLIPAFALGRA
Sbjct: 188 HLGAAQIDRLKLDLLITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIPAFALGRA 247
Query: 266 QELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQSNPFHFK 325
QEL ++LD+YW KIPIY+++ L + Y+ I +++I+N + NPF FK
Sbjct: 248 QELCILLDDYWERMNL--KIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVHNPFDFK 305
Query: 326 HIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIPGYVVEGTLA-K 384
H+ ++ GP V+ A+PG + G S ++F KW +KN +PGY V GT+ K
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGTIGHK 364
Query: 385 TIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIVLVHGEANEMS 444
+ +P + + + Q+H +SFS H D + L P +++LVHGE +M+
Sbjct: 365 LMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFLSPSHVILVHGEKPQMA 424
Query: 445 RLKQKLISQFDGTNIKVVNPKNCQSVEM 472
LK+++ S+ ++ P N ++V +
Sbjct: 425 FLKERIESEL---GMQCCYPANNETVSI 449
>Os09g0569400 Beta-lactamase-like domain containing protein
Length = 738
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 172/383 (44%), Gaps = 35/383 (9%)
Query: 28 GDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 81
G + +TPL G C ++ G L DCG + D DPS
Sbjct: 2 GTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCG------------WTDLCDPSHLQPLA 49
Query: 82 ----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSV 137
TID +L++H H +LPY ++ V+ T + L L DY +S+ V
Sbjct: 50 KVAPTIDAVLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYF-ISRRQV 108
Query: 138 EDM-LFDEQDILRSMDKIEVIDFHQTLEVN----GIRFWCYTAGHVLGAAMFMVDIAGVR 192
D LF DI + + + + Q +N GI + AGH LG ++ + G
Sbjct: 109 SDFDLFTLDDIDAAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED 168
Query: 193 VLYTGDYSREEDRHLKAAELPQF-SPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQ 251
V+Y D++ ++RHL L F P + I ++ + H + +++ F D + ++
Sbjct: 169 VVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTG 228
Query: 252 GGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNER 311
GG VL+P GR E+LLIL++YWA ++ PIY+ + ++ + ++++ MN+
Sbjct: 229 GGSVLLPIDTAGRVLEILLILEQYWAQRHLIY--PIYFLTNVSTSTVDYVKSFLEWMNDS 286
Query: 312 IRNQF--AQSNPFHFKHIESLNSIDNFHDVG--PSVVMASPGGLQSGLSRQLFDKWCTDK 367
I F + N F K + + + D +G P VV+AS L+ G S +F +
Sbjct: 287 ISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEA 346
Query: 368 KNSCVIPGYVVEGTLAKTIINEP 390
KN + GTLA+ + +P
Sbjct: 347 KNLVLFTEKGQFGTLARMLQVDP 369
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,293,040
Number of extensions: 856608
Number of successful extensions: 1763
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 3
Length of query: 700
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 592
Effective length of database: 11,396,689
Effective search space: 6746839888
Effective search space used: 6746839888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)