Os03g0852900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit).
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Os03g0852900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.74 | 0.192 | 12.3 | 0.141 | 0.326 | -0.371 | -0.163 | -0.449 | -0.148 | 18.5 | 46.93 | 9 | -- | -- |
| 17.33 | 0.194 | 12.3 | 0.152 | 0.335 | -0.402 | -0.298 | -- | -0.147 | 19 | 44.36 | 8 | -- | -- |
| 16.81 | 0.191 | 12.3 | 0.144 | 0.325 | -0.375 | -- | -0.475 | -0.148 | 18.6 | 47.03 | 8 | -- | -- |
| 17.54 | 0.195 | 12.3 | 0.159 | 0.327 | -0.375 | -- | -- | -0.147 | 18.6 | 45.16 | 8 | -- | -- |
| 20.67 | 0.212 | 12.3 | 0.15 | -- | -0.444 | -- | -0.471 | -0.176 | -- | 60.83 | 207 | -- | -- |
| 19.94 | 0.209 | 12.3 | 0.169 | 0.392 | -- | 0.123 | -- | -0.145 | 15.8 | -- | -- | -- | -- |
| 19.99 | 0.209 | 12.3 | 0.17 | 0.394 | -- | -- | -- | -0.144 | 15.9 | -- | -- | -- | -- |
| 19.8 | 0.207 | 12.3 | 0.155 | -- | -0.399 | -- | -- | -0.163 | -- | 4.258 | 502 | -- | -- |
| 18.21 | 0.199 | 12.3 | -- | 0.326 | -0.381 | -- | -- | -0.165 | 18.7 | 44.36 | 8 | -- | -- |
| 28.51 | 0.25 | 12.3 | 0.154 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 20.75 | 0.213 | 12.3 | -- | 0.391 | -- | -- | -- | -0.163 | 15.9 | -- | -- | -- | -- |
| 20.41 | 0.21 | 12.3 | -- | -- | -0.398 | -- | -- | -0.182 | -- | 3.834 | 502 | -- | -- |
| 29.14 | 0.252 | 12.3 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 12 | 15.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 14 | 15.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 37 | 15.84 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 38 | 15.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 40 | 15.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 43 | 15.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 45 | 15.86 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 3 | 16 |
| 80 | 15.99 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 9 |
| 84 | 16.00 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 133 | 16.15 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 204 | 16.27 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 8 |
| 227 | 16.30 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 231 | 16.31 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 256 | 16.33 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 18 |
| 285 | 16.37 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 317 | 16.42 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 17 |
| 330 | 16.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 340 | 16.44 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 13 |
| 373 | 16.47 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 8 |
| 397 | 16.48 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 8 |
| 424 | 16.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 445 | 16.52 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 16 |
| 495 | 16.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 536 | 16.59 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 541 | 16.60 | radiation | 1 | 270 | > th | dose dependent | sin | 8 | NA |
| 577 | 16.63 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 613 | 16.65 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 616 | 16.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 625 | 16.66 | radiation | 40 | 270 | < th | dose dependent | sin | 7 | NA |
| 632 | 16.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 642 | 16.67 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 643 | 16.67 | atmosphere | 995 | 270 | > th | dose independent | rect. | 14 | 16 |
| 651 | 16.67 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 652 | 16.67 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 655 | 16.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 676 | 16.69 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 677 | 16.69 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 698 | 16.70 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 701 | 16.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 708 | 16.71 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 7 |
| 720 | 16.72 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 16 |
| 736 | 16.72 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 748 | 16.73 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 794 | 16.75 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 803 | 16.76 | radiation | 1 | 90 | > th | dose dependent | sin | 3 | NA |
| 811 | 16.76 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 828 | 16.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 965 | 16.83 | radiation | 30 | 90 | < th | dose independent | rect. | 15 | 16 |
| 992 | 16.84 | humidity | 90 | 10 | < th | dose independent | rect. | 8 | 8 |