BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0852900 Os03g0852900|AK100660
(700 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61010.1 | chr1:22474954-22477660 REVERSE LENGTH=694 1114 0.0
AT2G01730.1 | chr2:320597-323845 FORWARD LENGTH=614 304 1e-82
AT5G23880.1 | chr5:8052550-8058147 FORWARD LENGTH=740 144 1e-34
>AT1G61010.1 | chr1:22474954-22477660 REVERSE LENGTH=694
Length = 693
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/684 (76%), Positives = 599/684 (87%), Gaps = 2/684 (0%)
Query: 19 KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEI 78
+R+ R+GDQLI+TPLGAG+EVGRSCVYMSF+G+ +LFDCGIHPAYSGMAALPYFDEI
Sbjct: 10 RREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEI 69
Query: 79 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 138
DPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 70 DPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVE 129
Query: 139 DMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 198
DMLFDEQDI +SMDKIEVIDFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGD
Sbjct: 130 DMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGD 189
Query: 199 YSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGRVLIP 258
YSREEDRHL+AAELPQFSPDICIIEST GVQ HQ RH+REKRFTDVIH+TV+QGGRVLIP
Sbjct: 190 YSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIP 249
Query: 259 AFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQ 318
AFALGRAQELLLILDEYWANHP+LH IPIYYASPLAKKCMAVYQTYI SMN+RIRNQFA
Sbjct: 250 AFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFAN 309
Query: 319 SNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIPGYVV 378
SNPF FKHI LNSID+F+DVGPSVVMA+PGGLQSGLSRQLFD WC+DKKN+C+IPGY+V
Sbjct: 310 SNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMV 369
Query: 379 EGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIVLVHG 438
EGTLAKTIINEP+EVTL NGLTAPL+MQVHYISFSAHAD+ QTSTFL EL PPNI+LVHG
Sbjct: 370 EGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 429
Query: 439 EANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMAKTIGRLAEKVPEAGESVN 498
EANEM RLKQKL+++F N K++ PKNC+SVEMYF+SEK+AKTIGRLAEK P+ G++V+
Sbjct: 430 EANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVS 489
Query: 499 GLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKYRLKQIYXXXX-XXX 557
G+LVKKGFTYQIMAP++L V++QLSTA +TQRI +P+ G+F VIK+RL++I+
Sbjct: 490 GILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTD 549
Query: 558 XXXDVPTLIVHERVTIRLESESYVTLQWSSDPIXXXXXXXXXXXXLNIGREGPKVVPVEE 617
+P L VHERVT++ ESE +++LQWSSDPI LNI RE PK+V EE
Sbjct: 550 EESGLPALKVHERVTVKQESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEE 609
Query: 618 -AVKTQEETERVAQKVVYALMVSLFGDVKVAEEGKLVISVDGQVAHLDGRSGGVECENAT 676
AVK++EE + +KV+YAL+VSLFGDVK+ E GKLVI VDG VA LD SG VE E++
Sbjct: 610 DAVKSEEENGKKVEKVIYALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSG 669
Query: 677 LRERIKTAFRRIQGAVRPIPLISS 700
L+ER++ AF RIQ AV+PIPL +S
Sbjct: 670 LKERVRVAFERIQSAVKPIPLSAS 693
>AT2G01730.1 | chr2:320597-323845 FORWARD LENGTH=614
Length = 613
Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 244/443 (55%), Gaps = 14/443 (3%)
Query: 36 LGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----TIDVLLITH 90
LGAG E+G+SCV ++ G+ ++FDCG+H P F I S I ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 91 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVS-KVSVEDMLFDEQDILR 149
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 150 SMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLK 208
M K+ ID QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLG 187
Query: 209 AAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGRVLIPAFALGRAQEL 268
AA++ + D+ I ESTY ++ RE+ F +H V+ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 269 LLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQSNPFHFKHIE 328
++LD+YW K+PIY++S L + Y+ I+ ++ ++ + NPF FK+++
Sbjct: 248 CMLLDDYWERMNI--KVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVK 305
Query: 329 SLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIPGYVVEGTLA-KTII 387
+ H GP V+ A+PG L +G S ++F W N +PGY V GT+ K +
Sbjct: 306 DFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMA 364
Query: 388 NEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIVLVHGEANEMSRLK 447
+P V L NG + +VH ++FS H D L P N+VLVHGE M LK
Sbjct: 365 GKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILK 424
Query: 448 QKLISQFDGTNIKVVNPKNCQSV 470
+K+ S+ D I P N ++V
Sbjct: 425 EKITSELD---IPCFVPANGETV 444
>AT5G23880.1 | chr5:8052550-8058147 FORWARD LENGTH=740
Length = 739
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 190/377 (50%), Gaps = 22/377 (5%)
Query: 28 GDQLIITPL-GAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPSTIDVL 86
G + +TPL G NE S + +S G L DCG + + + L + STID +
Sbjct: 2 GTSVQVTPLCGVYNENPLSYL-VSIDGFNFLIDCGWNDLFD-TSLLEPLSRV-ASTIDAV 58
Query: 87 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL-LLSDYVK-VSKVSVEDM-LFD 143
L++H H +LPY +++ V+ AT+ ++RL LL+ Y + +S+ V D LF
Sbjct: 59 LLSHPDTLHIGALPYAMKQLGLSAPVY---ATEPVHRLGLLTMYDQFLSRKQVSDFDLFT 115
Query: 144 EQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 199
DI + + + + Q ++G I + AGH+LG +++ + G V+Y DY
Sbjct: 116 LDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDY 175
Query: 200 SREEDRHLKAAELPQF-SPDICIIESTYGVQQHQ-PRHVREKRFTDVIHTTVSQGGRVLI 257
+ ++RHL L F P + I ++ + + +Q R R+K F D I + GG VL+
Sbjct: 176 NHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLL 235
Query: 258 PAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFA 317
P GR ELLLIL+++W+ PIY+ + ++ + ++++ M++ I F
Sbjct: 236 PVDTAGRVLELLLILEQHWSQRG--FSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFE 293
Query: 318 QS--NPFHFKHIESLNSIDNFHDV--GPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVI 373
S N F +H+ L + + + GP VV+AS L++G +R++F +W D +N +
Sbjct: 294 TSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLF 353
Query: 374 PGYVVEGTLAKTIINEP 390
GTLA+ + + P
Sbjct: 354 TETGQFGTLARMLQSAP 370
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,752,102
Number of extensions: 559125
Number of successful extensions: 1355
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 3
Length of query: 700
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 594
Effective length of database: 8,200,473
Effective search space: 4871080962
Effective search space used: 4871080962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)