BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0851700 Os03g0851700|AK068082
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0851700 Similar to TGB12K interacting protein 3 536 e-152
Os09g0513000 Similar to TGB12K interacting protein 3 405 e-113
Os08g0539600 Similar to TGB12K interacting protein 2 195 4e-50
Os04g0681900 Similar to Acyl-CoA binding protein 72 5e-13
>Os03g0851700 Similar to TGB12K interacting protein 3
Length = 350
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/312 (85%), Positives = 268/312 (85%)
Query: 39 NPFDFSTMMNLLNDPSIKEMAEQIAKDPAFTEMAEQLQKTVQSXXXXXXXXXXXXXXXXX 98
NPFDFSTMMNLLNDPSIKEMAEQIAKDPAFTEMAEQLQKTVQS
Sbjct: 39 NPFDFSTMMNLLNDPSIKEMAEQIAKDPAFTEMAEQLQKTVQSPPARGAAQEAAAAAAPA 98
Query: 99 LDPSKYVSTMQQLMQNPQFVAMAERLGSALMQDPAMSSMLGGLTNPAHKEQLEARIARMK 158
LDPSKYVSTMQQLMQNPQFVAMAERLGSALMQDPAMSSMLGGLTNPAHKEQLEARIARMK
Sbjct: 99 LDPSKYVSTMQQLMQNPQFVAMAERLGSALMQDPAMSSMLGGLTNPAHKEQLEARIARMK 158
Query: 159 DDPSLKPILDEIENGGPAAMMKYWNDPEALQKFGRAMGVGPSXXXXXXXXXXXXXXXXXX 218
DDPSLKPILDEIENGGPAAMMKYWNDPEALQKFGRAMGVGPS
Sbjct: 159 DDPSLKPILDEIENGGPAAMMKYWNDPEALQKFGRAMGVGPSGEGAAAAGGEHEEAEEEG 218
Query: 219 XXXXXXXXXSVIHHTASVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVL 278
SVIHHTASVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVL
Sbjct: 219 GEEGEYEDESVIHHTASVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVL 278
Query: 279 LEAGAAVDAVDKNKNTALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKTAIDVAKLNNQE 338
LEAGAAVDAVDKNKNTALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKTAIDVAKLNNQE
Sbjct: 279 LEAGAAVDAVDKNKNTALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKTAIDVAKLNNQE 338
Query: 339 EVLKLLEKHAFV 350
EVLKLLEKHAFV
Sbjct: 339 EVLKLLEKHAFV 350
>Os09g0513000 Similar to TGB12K interacting protein 3
Length = 329
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/312 (64%), Positives = 233/312 (74%), Gaps = 12/312 (3%)
Query: 39 NPFDFSTMMNLLNDPSIKEMAEQIAKDPAFTEMAEQLQKTVQSXXXXXXXXXXXXXXXXX 98
NPFDFS NLLNDPSIKEMAEQIA DP FT+MAEQLQK+
Sbjct: 30 NPFDFSQFSNLLNDPSIKEMAEQIASDPVFTQMAEQLQKSAH---------VTGEQGGPA 80
Query: 99 LDPSKYVSTMQQLMQNPQFVAMAERLGSALMQDPAMSSMLGGLTNPAHKEQLEARIARMK 158
LDP +Y+ TM Q+MQNPQF++MAERLG+ LMQDP MSSML LT+P+HKE LE R++R+K
Sbjct: 81 LDPQQYMETMTQVMQNPQFMSMAERLGNTLMQDPGMSSMLESLTSPSHKELLEERMSRIK 140
Query: 159 DDPSLKPILDEIENGGPAAMMKYWNDPEALQKFGRAMGVGPSXXXXXXXXXXXXXXXXXX 218
+DPSLK ILDEIE+GGP+AM+KYWNDPE LQK G+AM +
Sbjct: 141 EDPSLKGILDEIESGGPSAMVKYWNDPEVLQKIGQAMSIN---FPGDAATSTTLSGPEET 197
Query: 219 XXXXXXXXXSVIHHTASVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVL 278
S++HHTASVGD EGLKKALE+G D DEED+EGRR LHFACGYGELKCA++L
Sbjct: 198 EEDGGDDDESIVHHTASVGDAEGLKKALEDGADMDEEDAEGRRALHFACGYGELKCAEIL 257
Query: 279 LEAGAAVDAVDKNKNTALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKTAIDVAKLNNQE 338
LEAGAAV+A+DKNKNT LHYAAGYGRK+CV LLL HGAAVT QNLDGKT I+VAKLNNQ+
Sbjct: 258 LEAGAAVNALDKNKNTPLHYAAGYGRKECVDLLLKHGAAVTPQNLDGKTPIEVAKLNNQD 317
Query: 339 EVLKLLEKHAFV 350
EVLK+LE AF+
Sbjct: 318 EVLKVLEMDAFL 329
>Os08g0539600 Similar to TGB12K interacting protein 2
Length = 122
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 106/116 (91%)
Query: 235 SVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVLLEAGAAVDAVDKNKNT 294
S+GD EGLKKAL+ G DKDEEDSEGRR LHFACGYGELKCAQVLLEAGAAVDA+DKNKNT
Sbjct: 7 SIGDDEGLKKALDGGADKDEEDSEGRRALHFACGYGELKCAQVLLEAGAAVDALDKNKNT 66
Query: 295 ALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKTAIDVAKLNNQEEVLKLLEKHAFV 350
LHYAAGYG K CV LLL +GAAVT++N+DGKTAIDVAKLNNQ+EVL+LLEK AF+
Sbjct: 67 PLHYAAGYGMKGCVDLLLKNGAAVTLENMDGKTAIDVAKLNNQDEVLRLLEKDAFL 122
>Os04g0681900 Similar to Acyl-CoA binding protein
Length = 336
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 230 IHHTASVGDVEGLKKALEEGVDKDEEDSEGRRGLHFACGYGELKCAQVLLEAGAAVDAVD 289
IH +A G ++ + K L GV+ + DSEGR LH+A G L ++L+ A A V+A D
Sbjct: 223 IHVSAREGAIDDIAKHLAAGVEVNMRDSEGRTPLHWAVDRGHLNSVEILVNANADVNAQD 282
Query: 290 KNKNTALHYAAGYGRKDCVALLLDHGAAVTVQNLDGKT 327
TALHYA R+D LL+ H A V +++ DG T
Sbjct: 283 NEGQTALHYAVLCEREDIAELLVKHHADVQIKDEDGNT 320
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,651,341
Number of extensions: 311337
Number of successful extensions: 1219
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1236
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)