Os09g0513000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TGB12K interacting protein 3.
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Os09g0513000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TGB12K interacting protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.19 | 0.2 | 12.8 | 0.383 | 0.973 | 0.712 | -0.153 | -1.06 | 0.358 | 21.3 | 93.65 | 331 | -- | -- |
| 18.98 | 0.203 | 12.8 | 0.357 | 0.993 | 0.728 | -0.00397 | -- | 0.358 | 21.3 | 93.66 | 355 | -- | -- |
| 18.24 | 0.199 | 12.8 | 0.387 | 0.969 | 0.727 | -- | -1.03 | 0.349 | 21.3 | 93.86 | 326 | -- | -- |
| 18.98 | 0.203 | 12.8 | 0.364 | 0.988 | 0.726 | -- | -- | 0.355 | 21.3 | 93.66 | 354 | -- | -- |
| 67.44 | 0.382 | 12.8 | 0.412 | -- | 0.325 | -- | -2.32 | 0.307 | -- | 94.85 | 166 | -- | -- |
| 23.11 | 0.225 | 12.8 | 0.384 | 0.887 | -- | -0.0552 | -- | 0.29 | 21.8 | -- | -- | -- | -- |
| 23.12 | 0.225 | 12.8 | 0.386 | 0.887 | -- | -- | -- | 0.29 | 21.8 | -- | -- | -- | -- |
| 68.92 | 0.387 | 12.8 | 0.409 | -- | -0.318 | -- | -- | 0.238 | -- | 93.88 | 2216 | -- | -- |
| 22.31 | 0.22 | 12.8 | -- | 1 | 0.679 | -- | -- | 0.328 | 21.3 | 92.96 | 384 | -- | -- |
| 70.01 | 0.391 | 12.8 | 0.394 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 27.04 | 0.243 | 12.8 | -- | 0.888 | -- | -- | -- | 0.247 | 21.8 | -- | -- | -- | -- |
| 69.39 | 0.388 | 12.8 | -- | -- | -0.369 | -- | -- | 0.169 | -- | 95 | 35287 | -- | -- |
| 74.12 | 0.402 | 12.8 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 18.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 18.94 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 4 | 18.98 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 5 | 18.98 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 7 | 19.00 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 15 | 19.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 18 | 19.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 34 | 19.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 42 | 19.39 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 81 | 19.59 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 90 | 19.68 | humidity | 90.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 92 | 19.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 93 | 19.69 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 96 | 19.70 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 102 | 19.71 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 107 | 19.72 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 111 | 19.73 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 23 | 11 |
| 113 | 19.73 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 122 | 19.74 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 132 | 19.74 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 148 | 19.76 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 172 | 19.78 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 191 | 19.80 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 223 | 19.82 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 227 | 19.83 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 24 | 8 |
| 277 | 19.91 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 284 | 19.93 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 291 | 19.94 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 306 | 19.96 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 322 | 19.99 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 332 | 20.00 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 339 | 20.01 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 24 | 23 |
| 348 | 20.02 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 17 |
| 349 | 20.02 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 374 | 20.05 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 384 | 20.06 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 16 |
| 388 | 20.07 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 397 | 20.07 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 402 | 20.08 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 410 | 20.10 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 425 | 20.11 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 432 | 20.12 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 437 | 20.13 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 454 | 20.14 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 466 | 20.15 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 469 | 20.15 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 472 | 20.16 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 490 | 20.18 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 522 | 20.19 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 19 |
| 529 | 20.19 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 542 | 20.21 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 18 |
| 543 | 20.21 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 19 |
| 553 | 20.21 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 574 | 20.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 581 | 20.23 | humidity | 90.0 | 30 | > th | dose dependent | sin | 2 | NA |
| 595 | 20.24 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 611 | 20.24 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 616 | 20.25 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 619 | 20.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 620 | 20.25 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 653 | 20.27 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 654 | 20.27 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 666 | 20.28 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 669 | 20.29 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 18 |
| 681 | 20.30 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 699 | 20.30 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 20 |
| 702 | 20.31 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 714 | 20.31 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 719 | 20.31 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 18 |
| 726 | 20.32 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 727 | 20.32 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 736 | 20.32 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 752 | 20.33 | humidity | 90.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 815 | 20.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 819 | 20.35 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 834 | 20.35 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 872 | 20.36 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 899 | 20.38 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 900 | 20.38 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 912 | 20.38 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 922 | 20.38 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 928 | 20.39 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 16 |
| 929 | 20.39 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 932 | 20.39 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 944 | 20.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 947 | 20.39 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 957 | 20.39 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 963 | 20.40 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 966 | 20.40 | radiation | 20.0 | 30 | < th | dose dependent | sin | 22 | NA |
| 998 | 20.41 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 12 |