BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0851500 Os03g0851500|AK070236
         (192 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0851500  Conserved hypothetical protein                      275   2e-74
Os01g0876900  Conserved hypothetical protein                      122   1e-28

>Os03g0851500 Conserved hypothetical protein
          Length = 192

 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 142/192 (73%)

Query: 1   MEATTSSLLVRPVDTRLSAASLPIXXXXXXXXXXXXXXXXXXXXXXXXXXXNYVVVPLDA 60
           MEATTSSLLVRPVDTRLSAASLPI                           NYVVVPLDA
Sbjct: 1   MEATTSSLLVRPVDTRLSAASLPIVVRARRRVAVVTAAAPERKPAAAASSSNYVVVPLDA 60

Query: 61  APSGITRPLVEILRDLNKRVPDTVVXXXXXXXXXXDPVIPWYHANRMLSFYAPGWCGEVR 120
           APSGITRPLVEILRDLNKRVPDTVV          DPVIPWYHANRMLSFYAPGWCGEVR
Sbjct: 61  APSGITRPLVEILRDLNKRVPDTVVRSSRRRASPSDPVIPWYHANRMLSFYAPGWCGEVR 120

Query: 121 DVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVXXXXXXXXXXXXXRFG 180
           DVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPV             RFG
Sbjct: 121 DVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVAAAEEAAFCKACARFG 180

Query: 181 FGLYLYHEDETP 192
           FGLYLYHEDETP
Sbjct: 181 FGLYLYHEDETP 192



>Os01g0876900 Conserved hypothetical protein
          Length = 188

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 5/134 (3%)

Query: 60  AAPS---GITRPLVEILRDLNKRVPDTVVXXXXXXXXXXDPVIPWYHANRMLSFYAPGWC 116
           AAP+   GI++PL E+LR+L KRVP+ +V             IPW+  N++L+ +AP W 
Sbjct: 54  AAPAPTEGISKPLAEVLRELGKRVPEALVKTRVEDGFSLK-YIPWHIVNKILNIHAPEWS 112

Query: 117 GEVRDVIYTDNGK-VTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVXXXXXXXXXXX 175
           GEVR ++Y+ +GK V+VIYRVT+ GTD E++REA GT+S +D  + DPV           
Sbjct: 113 GEVRSIVYSSDGKSVSVIYRVTLHGTDAEIYREATGTSSADDTGYGDPVQKAEAMAFRRA 172

Query: 176 XXRFGFGLYLYHED 189
             R G GL+LYHED
Sbjct: 173 CTRLGLGLHLYHED 186



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,757,829
Number of extensions: 147958
Number of successful extensions: 203
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)