Os01g0876900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0876900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.9 | 0.423 | 9.41 | 1.09 | 2.47 | 1.72 | 0.506 | -1.89 | 0.0547 | 17.9 | 24.9 | 87 | -- | -- |
| 82.16 | 0.422 | 9.39 | 1.32 | 2.48 | 1.56 | 0.281 | -- | 0.0907 | 17.9 | 24.51 | 86 | -- | -- |
| 81.46 | 0.42 | 9.4 | 1.13 | 2.46 | 1.72 | -- | -1.55 | 0.065 | 17.9 | 24.9 | 85 | -- | -- |
| 82.35 | 0.423 | 9.39 | 1.31 | 2.47 | 1.57 | -- | -- | 0.0897 | 17.9 | 24.5 | 86 | -- | -- |
| 267.55 | 0.762 | 9.42 | 0.797 | -- | 3.45 | -- | -1.92 | -0.141 | -- | 24.22 | 282 | -- | -- |
| 120.79 | 0.515 | 9.36 | 1.58 | 3.03 | -- | 1.01 | -- | 0.248 | 17.4 | -- | -- | -- | -- |
| 123.32 | 0.52 | 9.36 | 1.58 | 3.04 | -- | -- | -- | 0.253 | 17.5 | -- | -- | -- | -- |
| 272.41 | 0.769 | 9.38 | 0.933 | -- | 3.41 | -- | -- | -0.135 | -- | 24.4 | 272 | -- | -- |
| 125.1 | 0.521 | 9.43 | -- | 2.34 | 1.92 | -- | -- | -0.126 | 18.1 | 23.87 | 100 | -- | -- |
| 604.75 | 1.15 | 9.31 | 1.48 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 189.18 | 0.643 | 9.4 | -- | 3.02 | -- | -- | -- | 0.0766 | 17.5 | -- | -- | -- | -- |
| 294.65 | 0.799 | 9.41 | -- | -- | 3.54 | -- | -- | -0.26 | -- | 24.3 | 272 | -- | -- |
| 662.47 | 1.2 | 9.35 | -- | -- | -- | -- | -- | 0.014 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 7 | 72.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 11 | 72.87 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 12 | 73.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 17 | 73.95 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 35 | 75.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 55 | 75.73 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 94 | 77.17 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 146 | 78.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 186 | 78.95 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 218 | 79.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 278 | 80.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 317 | 80.21 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 338 | 80.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 8 |
| 353 | 80.47 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 385 | 80.70 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 437 | 80.94 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 561 | 81.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 590 | 82.08 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 619 | 82.40 | temperature | 25 | 90 | > th | dose independent | sin | 23 | NA |
| 631 | 82.56 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 16 |
| 643 | 82.65 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 711 | 83.27 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 777 | 83.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 13 |
| 880 | 84.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |
| 957 | 85.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 999 | 85.54 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 12 |