BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0836500 Os03g0836500|AK120568
         (107 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0836500  Conserved hypothetical protein                      169   5e-43
Os07g0250300  Conserved hypothetical protein                       96   6e-21

>Os03g0836500 Conserved hypothetical protein
          Length = 107

 Score =  169 bits (427), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 95/107 (88%)

Query: 1   MNLRPXXXXXXXXXXXXTSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEK 60
           MNLRP            TSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEK
Sbjct: 1   MNLRPVVLIFLLLVLIITSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEK 60

Query: 61  NIQQLNGLIQSLQLQLLHCRLSNSTAHTTSNKSTNNSAVEGHKMIDD 107
           NIQQLNGLIQSLQLQLLHCRLSNSTAHTTSNKSTNNSAVEGHKMIDD
Sbjct: 61  NIQQLNGLIQSLQLQLLHCRLSNSTAHTTSNKSTNNSAVEGHKMIDD 107



>Os07g0250300 Conserved hypothetical protein
          Length = 107

 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 75/107 (70%)

Query: 1   MNLRPXXXXXXXXXXXXTSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEK 60
           MN RP            TSQFEWKQQ+G+A A+PA  RRR Q + +EDAVKEKII +QEK
Sbjct: 1   MNTRPVVLVFLLLVLVITSQFEWKQQIGDAAADPADARRRHQGLAKEDAVKEKIIFSQEK 60

Query: 61  NIQQLNGLIQSLQLQLLHCRLSNSTAHTTSNKSTNNSAVEGHKMIDD 107
           NIQQLN LI+SLQ QLLHCR SN+T HTT+   T  S V+G + IDD
Sbjct: 61  NIQQLNELIESLQRQLLHCRGSNNTVHTTTVSHTEVSEVDGQESIDD 107



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,610,475
Number of extensions: 71571
Number of successful extensions: 226
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)