Os03g0836500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0836500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.83 | 0.285 | 11.4 | -0.385 | 0.571 | 0.484 | 0.252 | -0.211 | -0.0135 | 23 | 19.8 | 287 | -- | -- |
| 36.92 | 0.283 | 11.4 | -0.356 | 0.559 | 0.514 | 0.274 | -- | -0.0103 | 23.1 | 19.88 | 326 | -- | -- |
| 37.1 | 0.284 | 11.4 | -0.398 | 0.57 | 0.489 | -- | -0.226 | -0.0163 | 23.1 | 19.76 | 286 | -- | -- |
| 37.23 | 0.284 | 11.4 | -0.374 | 0.558 | 0.533 | -- | -- | -0.0116 | 23.1 | 19.8 | 327 | -- | -- |
| 53.99 | 0.342 | 11.4 | -0.413 | -- | 0.53 | -- | -0.113 | -0.0396 | -- | 20.7 | 753 | -- | -- |
| 43.9 | 0.311 | 11.4 | -0.184 | 0.553 | -- | 0.355 | -- | 0.0781 | 22.6 | -- | -- | -- | -- |
| 44.43 | 0.312 | 11.4 | -0.199 | 0.551 | -- | -- | -- | 0.077 | 22.6 | -- | -- | -- | -- |
| 53.68 | 0.341 | 11.4 | -0.421 | -- | 0.671 | -- | -- | -0.0318 | -- | 19.35 | 653 | -- | -- |
| 40.47 | 0.296 | 11.4 | -- | 0.574 | 0.391 | -- | -- | 0.0474 | 23 | 20.1 | 262 | -- | -- |
| 63.13 | 0.371 | 11.4 | -0.188 | -- | -- | -- | -- | 0.0798 | -- | -- | -- | -- | -- |
| 45.47 | 0.315 | 11.4 | -- | 0.55 | -- | -- | -- | 0.0991 | 22.6 | -- | -- | -- | -- |
| 57.45 | 0.353 | 11.4 | -- | -- | 0.399 | -- | -- | 0.00316 | -- | 21.3 | 752 | -- | -- |
| 64.06 | 0.374 | 11.4 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 32.66 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 4 | 32.68 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 5 | 32.72 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 6 | 32.73 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 8 | 32.80 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 10 | 32.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 13 | 32.87 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 18 | 32.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 25 | 32.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 32 | 32.97 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 40 | 32.99 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 49 | 33.04 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 59 | 33.05 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 76 | 33.11 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 84 | 33.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 87 | 33.14 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 102 | 33.18 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 106 | 33.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 146 | 33.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 157 | 33.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 173 | 33.29 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 175 | 33.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 176 | 33.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 185 | 33.31 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 222 | 33.37 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 232 | 33.39 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 241 | 33.41 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 252 | 33.42 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 273 | 33.45 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 298 | 33.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 301 | 33.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 309 | 33.49 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 316 | 33.50 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 353 | 33.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 377 | 33.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 385 | 33.61 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 409 | 33.64 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 431 | 33.67 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 463 | 33.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 464 | 33.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 469 | 33.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 477 | 33.73 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 518 | 33.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 544 | 33.80 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 568 | 33.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 586 | 33.85 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 618 | 33.88 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 664 | 33.93 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 666 | 33.93 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 687 | 33.95 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 713 | 33.97 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 752 | 34.00 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 776 | 34.02 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 777 | 34.02 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 785 | 34.03 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 786 | 34.03 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 804 | 34.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 850 | 34.07 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 856 | 34.08 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 866 | 34.09 | humidity | 90.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 873 | 34.09 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 938 | 34.13 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 991 | 34.16 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 1000 | 34.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 12 |