BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0836500 Os03g0836500|AK120568
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44280.1  | chr3:15968760-15970532 REVERSE LENGTH=109           70   2e-13
AT5G06265.1  | chr5:1906596-1907382 FORWARD LENGTH=107             49   7e-07
AT5G22280.3  | chr5:7374272-7375112 REVERSE LENGTH=137             47   2e-06

>AT3G44280.1 | chr3:15968760-15970532 REVERSE LENGTH=109
          Length = 108

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 61/83 (73%)

Query: 18  TSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEKNIQQLNGLIQSLQLQLL 77
           TSQFEW+Q + E +   ++++++QQ+  RE+AVKEKII++QE++IQ+LN L++SLQLQLL
Sbjct: 17  TSQFEWRQPLVELDTATSSSQKQQQISDREEAVKEKIIISQERHIQRLNELVRSLQLQLL 76

Query: 78  HCRLSNSTAHTTSNKSTNNSAVE 100
            C+  N T + T +   N   +E
Sbjct: 77  QCKGENETQNATKSYHINKQFIE 99



>AT5G06265.1 | chr5:1906596-1907382 FORWARD LENGTH=107
          Length = 106

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 18  TSQFEWKQQV---GEAEANPA--ATRRRQQVILREDAVKEKIILAQEKNIQQLNGLIQSL 72
           TSQFEW +QV    E  + P   + + +Q +   +++V+ K IL QEK IQ+LN L++ L
Sbjct: 17  TSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKILFQEKKIQKLNELVRDL 76

Query: 73  QLQLLHCRLSNSTAHTTSNKSTNNSAVEG 101
           + QLL CR  N    T      +   V G
Sbjct: 77  RRQLLQCRNENQVELTELETELDQLLVTG 105



>AT5G22280.3 | chr5:7374272-7375112 REVERSE LENGTH=137
          Length = 136

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 4  RPXXXXXXXXXXXXTSQFEWKQQVGEAEANPAATRRRQQVILREDAVKEKIILAQEKNIQ 63
          RP            TSQFEW+Q + E +A P+ +++ QQ+  RE+AVKEK+ L ++  + 
Sbjct: 3  RPIMLVFLLVILIVTSQFEWRQPLLELDAAPSLSQKHQQIAKREEAVKEKMRLVEKHRLI 62

Query: 64 QLNGL 68
           L  L
Sbjct: 63 GLATL 67



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,681,184
Number of extensions: 47120
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)