Os07g0250300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0250300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.83 | 0.204 | 11.7 | 0.294 | 0.55 | -0.257 | -0.226 | -0.719 | 0.241 | 3.79 | 25.5 | 155 | -- | -- |
| 19.91 | 0.208 | 11.7 | 0.499 | 0.544 | -0.296 | 0.121 | -- | 0.31 | 3.48 | 25.52 | 215 | -- | -- |
| 18.94 | 0.203 | 11.7 | 0.317 | 0.554 | -0.254 | -- | -0.635 | 0.248 | 3.76 | 25.5 | 155 | -- | -- |
| 19.95 | 0.208 | 11.7 | 0.498 | 0.541 | -0.299 | -- | -- | 0.311 | 3.5 | 25.53 | 214 | -- | -- |
| 29.26 | 0.252 | 11.7 | 0.492 | -- | -0.532 | -- | -0.426 | 0.369 | -- | 25.7 | 157 | -- | -- |
| 24.23 | 0.231 | 11.7 | 0.415 | 0.762 | -- | 0.234 | -- | 0.185 | 3.83 | -- | -- | -- | -- |
| 24.39 | 0.231 | 11.8 | 0.412 | 0.764 | -- | -- | -- | 0.183 | 3.86 | -- | -- | -- | -- |
| 30.15 | 0.256 | 11.7 | 0.568 | -- | -0.562 | -- | -- | 0.395 | -- | 25.7 | 178 | -- | -- |
| 26.22 | 0.238 | 11.7 | -- | 0.599 | -0.227 | -- | -- | 0.228 | 3.61 | 25.5 | 211 | -- | -- |
| 56.46 | 0.351 | 11.8 | 0.444 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 28.86 | 0.251 | 11.8 | -- | 0.772 | -- | -- | -- | 0.137 | 3.85 | -- | -- | -- | -- |
| 39.12 | 0.291 | 11.7 | -- | -- | -0.518 | -- | -- | 0.317 | -- | 25.78 | 165 | -- | -- |
| 61.65 | 0.366 | 11.8 | -- | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.32 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 2 | 19.40 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 19.45 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 22 |
| 4 | 19.47 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 8 | 19.60 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 22 |
| 18 | 19.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 19 | 19.72 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 35 | 19.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 38 | 19.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 56 | 19.85 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 57 | 19.86 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 60 | 19.86 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 87 | 19.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 88 | 19.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 117 | 19.98 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 128 | 20.00 | temperature | 30.0 | 90 | < th | dose dependent | sin | 21 | NA |
| 138 | 20.02 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 140 | 20.03 | temperature | 25.0 | 270 | > th | dose independent | sin | 2 | NA |
| 144 | 20.03 | temperature | 25.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 160 | 20.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 23 |
| 161 | 20.07 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 12 |
| 166 | 20.07 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 176 | 20.09 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 186 | 20.12 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 197 | 20.13 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 206 | 20.14 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 211 | 20.15 | temperature | 25.0 | 30 | < th | dose independent | sin | 20 | NA |
| 250 | 20.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 253 | 20.18 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 254 | 20.19 | temperature | 25.0 | 30 | > th | dose independent | sin | 21 | NA |
| 278 | 20.20 | temperature | 20.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 313 | 20.23 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 314 | 20.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 324 | 20.24 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 327 | 20.24 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 338 | 20.25 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 347 | 20.25 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 363 | 20.26 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 383 | 20.27 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 386 | 20.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 15 |
| 394 | 20.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 406 | 20.29 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 413 | 20.29 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 414 | 20.29 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 415 | 20.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 2 | 9 |
| 418 | 20.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 23 | 13 |
| 421 | 20.30 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 23 |
| 432 | 20.30 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 442 | 20.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 459 | 20.32 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 467 | 20.33 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 484 | 20.34 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 513 | 20.36 | temperature | 25.0 | 270 | > th | dose independent | rect. | 5 | 15 |
| 532 | 20.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 565 | 20.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 566 | 20.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 578 | 20.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 601 | 20.39 | temperature | 25.0 | 30 | > th | dose independent | rect. | 11 | 15 |
| 701 | 20.42 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 703 | 20.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 714 | 20.43 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 752 | 20.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 5 |
| 756 | 20.44 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 841 | 20.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 857 | 20.48 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 874 | 20.48 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 942 | 20.51 | temperature | 10.0 | 90 | > th | dose dependent | sin | 21 | NA |