BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0250300 Os07g0250300|AK072884
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44280.1  | chr3:15968760-15970532 REVERSE LENGTH=109           64   1e-11
AT5G06265.1  | chr5:1906596-1907382 FORWARD LENGTH=107             48   1e-06

>AT3G44280.1 | chr3:15968760-15970532 REVERSE LENGTH=109
          Length = 108

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%)

Query: 18 TSQFEWKQQIGXXXXXXXXXXXXHQGLAKEDAVKEKIIFSQEKNIQQLNELIESLQRQLL 77
          TSQFEW+Q +              Q   +E+AVKEKII SQE++IQ+LNEL+ SLQ QLL
Sbjct: 17 TSQFEWRQPLVELDTATSSSQKQQQISDREEAVKEKIIISQERHIQRLNELVRSLQLQLL 76

Query: 78 HCRGSN 83
           C+G N
Sbjct: 77 QCKGEN 82



>AT5G06265.1 | chr5:1906596-1907382 FORWARD LENGTH=107
          Length = 106

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 17 ITSQFEWKQQI------GXXXXXXXXXXXXHQGLAKEDAVKEKIIFSQEKNIQQLNELIE 70
          +TSQFEW +Q+                   H    KE    +KI+F QEK IQ+LNEL+ 
Sbjct: 16 LTSQFEWNEQVENESETSSRPLILSDKEQQHIPQGKESVQVKKILF-QEKKIQKLNELVR 74

Query: 71 SLQRQLLHCRGSN 83
           L+RQLL CR  N
Sbjct: 75 DLRRQLLQCRNEN 87



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,221,136
Number of extensions: 29760
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)