BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0832900 Os03g0832900|AK060945
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0832900 Similar to DNAJ-like protein (Fragment) 501 e-142
Os12g0612400 Similar to S-locus protein 5 (Fragment) 210 7e-55
>Os03g0832900 Similar to DNAJ-like protein (Fragment)
Length = 265
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK
Sbjct: 1 MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
Query: 61 GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA 120
GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA
Sbjct: 61 GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA 120
Query: 121 KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV 180
KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV
Sbjct: 121 KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV 180
Query: 181 NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFEWLQNALQSGMFESFGAQNE 238
NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFEWLQNALQSGMFESFGAQNE
Sbjct: 181 NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFEWLQNALQSGMFESFGAQNE 238
>Os12g0612400 Similar to S-locus protein 5 (Fragment)
Length = 544
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 142/230 (61%), Gaps = 27/230 (11%)
Query: 1 MLVHPDKNMGNDKAADAFKKLQNAYEVLLDSLKRKTYDDELRREELLNYFRRFQSASQKK 60
+LVHPDKNMGN A ++FKKLQ+AYEVL D K+ TYDD+LR+EE +R + SQ+
Sbjct: 315 LLVHPDKNMGNPLACESFKKLQSAYEVLSDFTKKNTYDDQLRKEESRKMTQRSRVVSQQT 374
Query: 61 GGSGIFRQGFSPSEGVDEGPYGLSRRIACKKCGDFHLWIYTGRAKSQARWCQDCNDFHQA 120
G + + SRRI C KCG+FHLWI T ++K++ARWCQDC+DFH A
Sbjct: 375 GVEFLSEE---------------SRRIQCTKCGNFHLWICTKKSKAKARWCQDCSDFHPA 419
Query: 121 KDGDGWVEQSFQPVLFGLLHKPELPHAYVCAESIIFDVTEWFTCQGMRCPANTHKPSFHV 180
KDGDGWVE F E+P A+VCAES +FDV+EW TCQGM C NTH PSF V
Sbjct: 420 KDGDGWVENKFSSSF------KEIPRAFVCAESKVFDVSEWATCQGMECKPNTHGPSFMV 473
Query: 181 NASLLKQNSGKGSTSAQRGGGIPNGVNMDGGIDEEEFFEWLQNALQSGMF 230
N + S + +S P +N + I E+EF WLQ AL SG+F
Sbjct: 474 NMVGADRMSQRSYSSR-----YPFSLNAE-MIPEDEFELWLQQALASGVF 517
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,414,563
Number of extensions: 436495
Number of successful extensions: 1175
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)