Os12g0612400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-locus protein 5 (Fragment).
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Os12g0612400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-locus protein 5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.78 | 0.198 | 10.5 | -0.351 | 0.481 | 0.365 | -0.333 | 0.334 | -0.132 | 9.27 | 21.4 | 1365 | -- | -- |
| 17.86 | 0.197 | 10.6 | -0.4 | 0.471 | 0.305 | -0.373 | -- | -0.156 | 9.18 | 22 | 1478 | -- | -- |
| 18.04 | 0.198 | 10.5 | -0.311 | 0.485 | 0.314 | -- | 0.339 | -0.127 | 9.24 | 22 | 1278 | -- | -- |
| 18.24 | 0.199 | 10.6 | -0.426 | 0.481 | 0.317 | -- | -- | -0.157 | 9.19 | 22.02 | 1380 | -- | -- |
| 30.53 | 0.259 | 10.6 | -0.366 | -- | 0.26 | -- | 0.0412 | -0.123 | -- | 22.08 | 1517 | -- | -- |
| 21.41 | 0.217 | 10.5 | -0.298 | 0.477 | -- | -0.325 | -- | -0.0544 | 9.14 | -- | -- | -- | -- |
| 21.77 | 0.219 | 10.5 | -0.31 | 0.479 | -- | -- | -- | -0.055 | 9.05 | -- | -- | -- | -- |
| 30.54 | 0.259 | 10.6 | -0.377 | -- | 0.26 | -- | -- | -0.125 | -- | 22.08 | 1517 | -- | -- |
| 22.5 | 0.221 | 10.5 | -- | 0.486 | 0.211 | -- | -- | -0.0814 | 9.13 | 22.4 | 1334 | -- | -- |
| 34.99 | 0.276 | 10.5 | -0.311 | -- | -- | -- | -- | -0.0522 | -- | -- | -- | -- | -- |
| 24.31 | 0.231 | 10.5 | -- | 0.479 | -- | -- | -- | -0.0205 | 9.1 | -- | -- | -- | -- |
| 34.2 | 0.273 | 10.6 | -- | -- | 0.223 | -- | -- | -0.0738 | -- | 22.08 | 1517 | -- | -- |
| 37.54 | 0.286 | 10.5 | -- | -- | -- | -- | -- | -0.0177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 9 | 17.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 21 | 17.78 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 23 | 17.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 28 | 17.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 29 | 17.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 37 | 17.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 38 | 17.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 2 |
| 39 | 17.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 52 | 17.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 56 | 17.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 65 | 17.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 79 | 17.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 11 |
| 84 | 17.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 146 | 17.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 164 | 17.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 228 | 17.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 242 | 17.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 243 | 17.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 245 | 17.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 247 | 17.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 264 | 17.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 274 | 17.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 309 | 18.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 330 | 18.03 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 370 | 18.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 390 | 18.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 393 | 18.06 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 411 | 18.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 471 | 18.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 634 | 18.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 18 |
| 647 | 18.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 650 | 18.16 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 671 | 18.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 16 |
| 687 | 18.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 736 | 18.18 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 21 |
| 898 | 18.22 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 13 |