BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0831700 Os03g0831700|AK066131
(886 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0831700 Conserved hypothetical protein 1689 0.0
Os03g0302900 Conserved hypothetical protein 101 2e-21
>Os03g0831700 Conserved hypothetical protein
Length = 886
Score = 1689 bits (4374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/886 (93%), Positives = 827/886 (93%)
Query: 1 MDVEKPTSKGHGFFSLFDWGKKSKKRLVSGNGSDSPAPRVSENFRESDGGTPSTRPNSFL 60
MDVEKPTSKGHGFFSLFDWGKKSKKRLVSGNGSDSPAPRVSENFRESDGGTPSTRPNSFL
Sbjct: 1 MDVEKPTSKGHGFFSLFDWGKKSKKRLVSGNGSDSPAPRVSENFRESDGGTPSTRPNSFL 60
Query: 61 EDAPXXXXXXXXXXXXXVVDDEALVRRGPTVVARLMGLDSMPAASSSGSYTMPLTVQQSP 120
EDAP VVDDEALVRRGPTVVARLMGLDSMPAASSSGSYTMPLTVQQSP
Sbjct: 61 EDAPSLKESSEHSCSSSVVDDEALVRRGPTVVARLMGLDSMPAASSSGSYTMPLTVQQSP 120
Query: 121 QNSTIHDEFIGRSYVGSPHKMPGSPHKMPGSPIDRFRMEALPPRFAKRTLSVAQNKLSPM 180
QNSTIHDEFIGRSYVGSPHKMPGSPHKMPGSPIDRFRMEALPPRFAKRTLSVAQNKLSPM
Sbjct: 121 QNSTIHDEFIGRSYVGSPHKMPGSPHKMPGSPIDRFRMEALPPRFAKRTLSVAQNKLSPM 180
Query: 181 KNPNHISSRNAADIMEAASRIIGAGVEVISPYRVRDVGYANTVRVYSQREIAIVQQRPPR 240
KNPNHISSRNAADIMEAASRIIGAGVEVISPYRVRDVGYANTVRVYSQREIAIVQQRPPR
Sbjct: 181 KNPNHISSRNAADIMEAASRIIGAGVEVISPYRVRDVGYANTVRVYSQREIAIVQQRPPR 240
Query: 241 MNEALKKHDGLTSYRLPTGKPLDGSLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSPDS 300
MNEALKKHDGLTSYRLPTGKPLDGSLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSPDS
Sbjct: 241 MNEALKKHDGLTSYRLPTGKPLDGSLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSPDS 300
Query: 301 RATNVQGREDISKISRKLATRDPERRMVERNGINQGKNNNQVGMASSSNVLVQNNRKQNA 360
RATNVQGREDISKISRKLATRDPERRMVERNGINQGKNNNQVGMASSSNVLVQNNRKQNA
Sbjct: 301 RATNVQGREDISKISRKLATRDPERRMVERNGINQGKNNNQVGMASSSNVLVQNNRKQNA 360
Query: 361 MVKHKVNSKPPTPNRQRSNTHSINGTMRKVGTAGTPSENNTQGNRNVELRSTGHANRRQN 420
MVKHKVNSKPPTPNRQRSNTHSINGTMRKVGTAGTPSENNTQGNRNVELRSTGHANRRQN
Sbjct: 361 MVKHKVNSKPPTPNRQRSNTHSINGTMRKVGTAGTPSENNTQGNRNVELRSTGHANRRQN 420
Query: 421 STAKSIPKPGRLPDGRIHSVKTRPSDKDIADRSQRRVRHNIVIDEQSPFSMNKKKISTDI 480
STAKSIPKPGRLPDGRIHSVKTRPSDKDIADRSQRRVRHNIVIDEQSPFSMNKKKISTDI
Sbjct: 421 STAKSIPKPGRLPDGRIHSVKTRPSDKDIADRSQRRVRHNIVIDEQSPFSMNKKKISTDI 480
Query: 481 VSFTFTAPVDKPLSGYRLPNHLVEKQFMKNASSVPNSSETSSAKFDSIDGDYXXXXXXXX 540
VSFTFTAPVDKPLSGYRLPNHLVEKQFMKNASSVPNSSETSSAKFDSIDGDY
Sbjct: 481 VSFTFTAPVDKPLSGYRLPNHLVEKQFMKNASSVPNSSETSSAKFDSIDGDYLGLLLEQK 540
Query: 541 XXXXTSGVRSPYCKPAKDVRIYAPSSVLEDSQSACETSSIASTDYDRESVQSYKDGKGSF 600
TSGVRSPYCKPAKDVRIYAPSSVLEDSQSACETSSIASTDYDRESVQSYKDGKGSF
Sbjct: 541 LRELTSGVRSPYCKPAKDVRIYAPSSVLEDSQSACETSSIASTDYDRESVQSYKDGKGSF 600
Query: 601 TQTDLASKSGQSSQSVKYDNDAMDQMEIERLHLSPLSTWDAXXXXXXXXXXXXXXXANGT 660
TQTDLASKSGQSSQSVKYDNDAMDQMEIERLHLSPLSTWDA ANGT
Sbjct: 601 TQTDLASKSGQSSQSVKYDNDAMDQMEIERLHLSPLSTWDASVSTETGSSTESWRSANGT 660
Query: 661 KVFSSTEGATTSNSACFSKFLEADAFSEYSDTAXXXXXXXXXXXXXXXXXXXRMDCRQEI 720
KVFSSTEGATTSNSACFSKFLEADAFSEYSDTA RMDCRQEI
Sbjct: 661 KVFSSTEGATTSNSACFSKFLEADAFSEYSDTASSITVTTTDIPPSDSSSSSRMDCRQEI 720
Query: 721 DFIREILNTSPLNGQICSGLERFINSDILDLQLLEDLNGDIRLAVGVAEGKTLRMNRRLL 780
DFIREILNTSPLNGQICSGLERFINSDILDLQLLEDLNGDIRLAVGVAEGKTLRMNRRLL
Sbjct: 721 DFIREILNTSPLNGQICSGLERFINSDILDLQLLEDLNGDIRLAVGVAEGKTLRMNRRLL 780
Query: 781 FECVNEILSVRCAYYFNAGYGSWFLGMAILKKLTAEEIYAEMTDLKVAEEWMVDELVYKE 840
FECVNEILSVRCAYYFNAGYGSWFLGMAILKKLTAEEIYAEMTDLKVAEEWMVDELVYKE
Sbjct: 781 FECVNEILSVRCAYYFNAGYGSWFLGMAILKKLTAEEIYAEMTDLKVAEEWMVDELVYKE 840
Query: 841 MSSPLGSWVDFKLESYESGIDITTELLGSLIDEMVADLLLVSDTSL 886
MSSPLGSWVDFKLESYESGIDITTELLGSLIDEMVADLLLVSDTSL
Sbjct: 841 MSSPLGSWVDFKLESYESGIDITTELLGSLIDEMVADLLLVSDTSL 886
>Os03g0302900 Conserved hypothetical protein
Length = 944
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 719 EIDFIREILNTSPLNGQICSGLERFINSD---ILDLQLLEDLNGDIRLAVGVAEGKTLRM 775
E+++I ++L L L FI+ D ++D L L + L + R
Sbjct: 773 ELEYIGDVLGNVNLTKGGLGSL--FISQDDVSVMDPHLFNKLES-MNLYTQGKKNLDRRG 829
Query: 776 NRRLLFECVNEILSVRCAYYFNAGYGSWFLGMAILKKLTAEEIYAEMTDLKVAEEWMVDE 835
R+LLF+CV+E L R YF AGY +W GMA + + E+ E+ + EW+ DE
Sbjct: 830 YRKLLFDCVSECLETRRLTYFRAGYAAWSKGMAAMSRGIETEVCNEIGGWRSMGEWVEDE 889
Query: 836 LVYKEMSSPLGSWVDFKLESYESGIDITTELLGSLIDEMVADLLL 880
LV K+MSS LG+WVDF++E +E+G ++ E+L SL+DE++ D+ +
Sbjct: 890 LVDKDMSSGLGTWVDFRVEEFETGEELEREILSSLVDEVIGDVFV 934
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,328,314
Number of extensions: 1176109
Number of successful extensions: 2881
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2871
Number of HSP's successfully gapped: 2
Length of query: 886
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 776
Effective length of database: 11,292,261
Effective search space: 8762794536
Effective search space used: 8762794536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)