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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0302900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.045) R2 : 0.517
β1 : -0.637 (0.179) R2dD : 0.0153 R2D : 0.0198
β2 : 2.17 (0.12) R2dC : 0.441 R2C : 0.0938
β3 : 2.8 (0.174) R2dE : 0.357 R2E : -0.0364
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.57 (0.661) R2dD*E : 0.0623 R2D*E : 0.0791
γ1 : -0.18 (0.0964) R2dN8 : 0.00501 R2N8 : -0.00335
σ : 0.819
deviance : 309.53
__
_____
C
peak time of C : 14.3
E
wheather : temperature
threshold : -27.03
memory length : 1214
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 18.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.03 0.821 4.23 -0.629 0.903 2.53 -2.37 3.82 -0.186 14.3 13.15 766 17.6 --
310.54 0.821 4.23 -0.908 0.187 2.97 -2.84 -- -0.217 11.6 8.748 748 19 --
309.53 0.819 4.22 -0.637 2.17 2.8 -- 4.57 -0.18 14.3 -27.03 1214 18.4 --
338.27 0.857 4.29 -1.16 1.11 3.31 -- -- -0.344 11.8 2.114 921 18.6 --
344 0.864 4.26 -0.884 -- 2.68 -- 2.19 -0.229 -- 6.925 744 18.9 --
385.39 0.92 4.29 -0.659 2.14 -- 0.773 -- -0.0952 17.6 -- -- -- --
386.54 0.921 4.29 -0.661 2.15 -- -- -- -0.0912 17.5 -- -- -- --
341.43 0.861 4.31 -1.15 -- 3.06 -- -- -0.35 -- 2.364 927 20.8 --
368.76 0.894 4.25 -- 1.02 2.48 -- -- -0.138 13.6 4.689 793 17.4 --
626.37 1.17 4.26 -0.732 -- -- -- -- -0.144 -- -- -- -- --
398.04 0.933 4.27 -- 2.16 -- -- -- -0.0176 17.5 -- -- -- --
371.1 0.897 4.26 -- -- 2.75 -- -- -0.157 -- 1.433 760 19.3 --
640.5 1.18 4.24 -- -- -- -- -- -0.0624 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 302.33 temperature 20 720 > th dose dependent rect. 11 3
2 302.71 temperature 10 720 > th dose dependent rect. 4 18
5 303.22 temperature 15 720 > th dose dependent rect. 8 6
16 304.63 temperature 15 270 > th dose dependent rect. 10 12
18 305.09 temperature 10 720 > th dose dependent rect. 4 10
24 305.50 temperature 10 720 > th dose dependent rect. 7 16
26 305.68 temperature 15 720 > th dose dependent sin 23 NA
40 306.35 temperature 10 720 > th dose dependent rect. 2 13
79 307.63 temperature 10 10 > th dose dependent sin 19 NA
153 309.63 temperature 30 720 < th dose independent rect. 9 17
226 311.39 temperature 30 720 < th dose independent rect. 16 19
283 312.66 temperature 30 720 < th dose independent rect. 15 11
381 314.71 temperature 30 720 < th dose independent sin 10 NA
406 315.18 temperature 30 720 < th dose independent rect. 6 15
419 315.39 temperature 30 720 < th dose independent rect. 9 10
420 315.40 temperature 30 720 < th dose independent rect. 14 7
425 315.47 temperature 30 720 < th dose independent rect. 9 12
458 315.99 temperature 30 720 < th dose independent rect. 22 14
475 316.23 temperature 30 720 < th dose independent sin 19 NA
479 316.29 temperature 30 720 < th dose independent rect. 5 7
496 316.57 temperature 15 10 > th dose dependent rect. 3 22
576 317.66 temperature 30 720 < th dose independent sin 4 NA
595 317.86 temperature 30 720 < th dose independent rect. 23 18
602 318.00 radiation 1 720 < th dose independent rect. 8 18
630 318.31 radiation 1 720 < th dose dependent rect. 8 18
647 318.59 radiation 30 720 < th dose dependent rect. 15 11
653 318.64 radiation 1 720 < th dose dependent rect. 11 15
668 318.85 radiation 10 720 < th dose dependent rect. 16 10
680 318.99 radiation 1 720 < th dose independent rect. 14 12
683 319.06 radiation 1 720 < th dose independent rect. 17 9
686 319.10 temperature 30 270 < th dose independent rect. 6 12
909 321.47 radiation 1 720 < th dose dependent rect. 5 21
998 322.53 temperature 30 720 < th dose dependent rect. 24 18