BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0826000 Os03g0826000|AK072695
(758 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0826000 Conserved hypothetical protein 1406 0.0
Os03g0287700 Hypothetical protein 177 2e-44
Os03g0819700 Conserved hypothetical protein 116 8e-26
>Os03g0826000 Conserved hypothetical protein
Length = 758
Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/758 (90%), Positives = 688/758 (90%)
Query: 1 MEQISLEHRYKECRPRRNNSCPTKTLVGKDQLKELEHRRPSPSVIAKLMGLDVLPPAYVA 60
MEQISLEHRYKECRPRRNNSCPTKTLVGKDQLKELEHRRPSPSVIAKLMGLDVLPPAYVA
Sbjct: 1 MEQISLEHRYKECRPRRNNSCPTKTLVGKDQLKELEHRRPSPSVIAKLMGLDVLPPAYVA 60
Query: 61 HNQHQEFKDVFEVSEEPQEAVTKERSHNFPKGXXXXXXXXXXXXXXMPSKSPYGDETFDN 120
HNQHQEFKDVFEVSEEPQEAVTKERSHNFPKG MPSKSPYGDETFDN
Sbjct: 61 HNQHQEFKDVFEVSEEPQEAVTKERSHNFPKGLPSLKRSALKLRKLMPSKSPYGDETFDN 120
Query: 121 NVVNQDGFDRLNSLEINNPLFEKHPYDVNCSPNYRYEKDSTSSTFRKYPVGLGNSSLKEI 180
NVVNQDGFDRLNSLEINNPLFEKHPYDVNCSPNYRYEKDSTSSTFRKYPVGLGNSSLKEI
Sbjct: 121 NVVNQDGFDRLNSLEINNPLFEKHPYDVNCSPNYRYEKDSTSSTFRKYPVGLGNSSLKEI 180
Query: 181 VVLELGLGEVQHSGNAFSTPEPSDVNKNFRRKMKQAEFSTTNRGSQNLLGTKDINVPRIK 240
VVLELGLGEVQHSGNAFSTPEPSDVNKNFRRKMKQAEFSTTNRGSQNLLGTKDINVPRIK
Sbjct: 181 VVLELGLGEVQHSGNAFSTPEPSDVNKNFRRKMKQAEFSTTNRGSQNLLGTKDINVPRIK 240
Query: 241 GERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCXXXXXXXXXXXXXXXXXXPWKI 300
GERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKC PWKI
Sbjct: 241 GERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCVSSEVNSRKSNRSSSNSSPWKI 300
Query: 301 RRKYEEGAIGSKTLAEMFALSDSERLKRDSDSHVQIQDNKLNRGNNNDKEGCFIVLPKHA 360
RRKYEEGAIGSKTLAEMFALSDSERLKRDSDSHVQIQDNKLNRGNNNDKEGCFIVLPKHA
Sbjct: 301 RRKYEEGAIGSKTLAEMFALSDSERLKRDSDSHVQIQDNKLNRGNNNDKEGCFIVLPKHA 360
Query: 361 PRLPPHSLLDKNSSCERSPHDIFFSNTSISHNSGQFHFDSFWDKPTRQQISSPTQDDLRN 420
PRLPPHSLLDKNSSCERSPHDIFFSNTSISHNSGQFHFDSFWDKPTRQQISSPTQDDLRN
Sbjct: 361 PRLPPHSLLDKNSSCERSPHDIFFSNTSISHNSGQFHFDSFWDKPTRQQISSPTQDDLRN 420
Query: 421 ASCARYHTLEQHRSSFPSYDNTRNNSWHLTDDFSTFACINEKVLFTTDEDLLRKPTETVH 480
ASCARYHTLEQHRSSFPSYDNTRNNSWHLTDDFSTFACINEKVLFTTDEDLLRKPTETVH
Sbjct: 421 ASCARYHTLEQHRSSFPSYDNTRNNSWHLTDDFSTFACINEKVLFTTDEDLLRKPTETVH 480
Query: 481 SSFGSRLSGEQKVSASPFHCGVYEAITISDHTCAAKSRRSLKEVDRPSPVSILEPPTDED 540
SSFGSRLSGEQKVSASPFHCGVYEAITISDHTCAAKSRRSLKEVDRPSPVSILEPPTDED
Sbjct: 481 SSFGSRLSGEQKVSASPFHCGVYEAITISDHTCAAKSRRSLKEVDRPSPVSILEPPTDED 540
Query: 541 SCCSGYLKNDSQVMPSIDKQIYGCELRYEQEVXXXXXXXXXXXXXXXXXXXXXXXXXFSY 600
SCCSGYLKNDSQVMPSIDKQIYGCELRYEQEV FSY
Sbjct: 541 SCCSGYLKNDSQVMPSIDKQIYGCELRYEQEVSLSSDNDNDSSDQSLEAFEVEEEKEFSY 600
Query: 601 LLDILISSGVIVADSQLLFKSWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLAN 660
LLDILISSGVIVADSQLLFKSWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLAN
Sbjct: 601 LLDILISSGVIVADSQLLFKSWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLAN 660
Query: 661 SVLSEILAPCIDTHPWAKLSRNCCXXXXXXXXXXXXXQTMVRQQEELAVAHPDDKILDPE 720
SVLSEILAPCIDTHPWAKLSRNCC QTMVRQQEELAVAHPDDKILDPE
Sbjct: 661 SVLSEILAPCIDTHPWAKLSRNCCPVWGPEGPVEVVWQTMVRQQEELAVAHPDDKILDPE 720
Query: 721 WLEFGEGINMVGWHIARMLHGDLLDDVILEFLSGFVAS 758
WLEFGEGINMVGWHIARMLHGDLLDDVILEFLSGFVAS
Sbjct: 721 WLEFGEGINMVGWHIARMLHGDLLDDVILEFLSGFVAS 758
>Os03g0287700 Hypothetical protein
Length = 131
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 101/138 (73%), Gaps = 7/138 (5%)
Query: 621 SWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLLFDLANSVLSEILAPCIDTHPWAKLS 680
SW S G VGP VFD+LE KY+K++ WPRP+RRLLFDLAN+VLSEILAP K S
Sbjct: 1 SWHSPGCPVGPQVFDRLERKYNKISAWPRPERRLLFDLANTVLSEILAP-------WKSS 53
Query: 681 RNCCXXXXXXXXXXXXXQTMVRQQEELAVAHPDDKILDPEWLEFGEGINMVGWHIARMLH 740
R CC QTMVR+QEELAV HPDDK+LDPEWLE GE IN VG IA+MLH
Sbjct: 54 RRCCPVWGPEGPVEVVWQTMVRRQEELAVGHPDDKVLDPEWLEVGEDINTVGKQIAKMLH 113
Query: 741 GDLLDDVILEFLSGFVAS 758
GDLLD++ILEFLSG VAS
Sbjct: 114 GDLLDEIILEFLSGCVAS 131
>Os03g0819700 Conserved hypothetical protein
Length = 586
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 29/266 (10%)
Query: 492 KVSASPFHCGV---YEAITISDHTCAAKSRRSLKEVDRPSPVSILEPPTDEDSCCSGYLK 548
K++ HC + +++ +++H KE+++PSPVS+LE P DED + +K
Sbjct: 318 KMTFKKVHCALAANLDSMYVTNH----------KELEQPSPVSVLEIP-DEDFSVTKSIK 366
Query: 549 ND----SQVM--PSIDKQIYGCELR---YEQEV----XXXXXXXXXXXXXXXXXXXXXXX 595
D S+++ PS++ E+ Y V
Sbjct: 367 LDLHPESELVRCPSVESTAEVGEIGISDYALGVDGLDASLNGEAIQLVEDIFEEFGDEEE 426
Query: 596 XXFSYLLDILISSGVIVADSQLLFKSWQSSGYLVGPHVFDKLEGKYSKVATWPRPQRRLL 655
FSY+LDILI SG+ L+K QS G VF+KLE KY KVA W R R+L+
Sbjct: 427 REFSYVLDILIVSGIHGTAEDQLYKVCQSLDCPAGYDVFEKLEKKYMKVAEWSRSDRKLI 486
Query: 656 FDLANSVLSEILAPCIDTHPWAKLSRNCCXXXXXXXXXXXXXQTMVRQQEELAVA--HPD 713
FD+ N++LSEILAPC+D HPW K +R Q +V+++EEL ++ P+
Sbjct: 487 FDMVNTILSEILAPCLDMHPWVKSARKMAPVWGSEGLLEKILQMLVQRREELGLSKTKPE 546
Query: 714 DKILDPEWLEFGEGINMVGWHIARML 739
K LD +W + + I+ VG + M+
Sbjct: 547 KKALDRKWPDLSDCIDRVGRDVENMI 572
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,075,764
Number of extensions: 1042258
Number of successful extensions: 2417
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2414
Number of HSP's successfully gapped: 3
Length of query: 758
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 650
Effective length of database: 11,396,689
Effective search space: 7407847850
Effective search space used: 7407847850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)