Os03g0826000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0826000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.85 | 0.62 | 6.24 | -1.56 | 3.54 | -0.704 | 1.6 | 1.65 | -0.516 | 7.02 | 30 | 1363 | -- | -- |
| 178.01 | 0.621 | 6.21 | -1.33 | 3.5 | -0.676 | 1.73 | -- | -0.431 | 6.91 | 18.12 | 1466 | -- | -- |
| 180.03 | 0.625 | 6.24 | -1.54 | 3.58 | -0.688 | -- | 2.06 | -0.501 | 7.03 | 29.95 | 1307 | -- | -- |
| 185.05 | 0.634 | 6.21 | -1.3 | 3.51 | -0.679 | -- | -- | -0.44 | 6.87 | 19.65 | 1475 | -- | -- |
| 812.52 | 1.33 | 6.26 | -1.17 | -- | -0.74 | -- | -0.427 | -0.211 | -- | 29.95 | 1307 | -- | -- |
| 193.21 | 0.652 | 6.18 | -1.24 | 3.51 | -- | 1.67 | -- | -0.279 | 6.92 | -- | -- | -- | -- |
| 200.36 | 0.663 | 6.18 | -1.22 | 3.52 | -- | -- | -- | -0.283 | 6.89 | -- | -- | -- | -- |
| 770.21 | 1.3 | 6.26 | -1.11 | -- | -0.895 | -- | -- | -0.236 | -- | 6.958 | 1495 | -- | -- |
| 225.39 | 0.699 | 6.21 | -- | 3.51 | -0.808 | -- | -- | -0.317 | 6.83 | 20 | 2958 | -- | -- |
| 850.34 | 1.36 | 6.26 | -1.14 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 239.3 | 0.724 | 6.15 | -- | 3.51 | -- | -- | -- | -0.148 | 6.91 | -- | -- | -- | -- |
| 802.91 | 1.32 | 6.24 | -- | -- | -0.904 | -- | -- | -0.113 | -- | 6.958 | 1495 | -- | -- |
| 884.64 | 1.39 | 6.23 | -- | -- | -- | -- | -- | -0.0902 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.13 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 2 | 167.51 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 4 |
| 3 | 167.57 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 6 | 167.70 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 8 | 167.76 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 7 |
| 20 | 168.98 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 7 |
| 23 | 169.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 27 | 169.45 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 36 | 170.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 43 | 170.29 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 19 |
| 46 | 170.40 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 53 | 170.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 91 | 171.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 109 | 171.55 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 111 | 171.63 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 14 |
| 112 | 171.64 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 12 |
| 132 | 171.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 141 | 171.98 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 144 | 172.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 145 | 172.04 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 11 |
| 175 | 172.27 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 19 |
| 183 | 172.32 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 210 | 172.53 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 236 | 172.64 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 257 | 172.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 267 | 172.84 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 271 | 172.86 | radiation | 30 | 1440 | < th | dose dependent | rect. | 3 | 13 |
| 293 | 172.92 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 10 |
| 344 | 173.18 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 13 |
| 378 | 173.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 381 | 173.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 398 | 173.32 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 413 | 173.39 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 426 | 173.44 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 15 |
| 445 | 173.49 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 449 | 173.49 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 493 | 173.57 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 551 | 173.63 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 568 | 173.70 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 569 | 173.71 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 608 | 173.81 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 618 | 173.83 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 658 | 173.97 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 689 | 174.06 | temperature | 20 | 90 | > th | dose independent | sin | 8 | NA |
| 699 | 174.08 | radiation | 40 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 712 | 174.10 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 777 | 174.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 793 | 174.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 797 | 174.20 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 799 | 174.21 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 811 | 174.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 812 | 174.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 863 | 174.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 889 | 174.29 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 921 | 174.35 | radiation | 10 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 927 | 174.36 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 21 |
| 928 | 174.36 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |