BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0822800 Os03g0822800|AK099592
         (176 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0822800  Similar to Chaperone protein dnaJ 1                 186   8e-48
Os02g0804500  Chaperone DnaJ family protein                        65   3e-11

>Os03g0822800 Similar to Chaperone protein dnaJ 1
          Length = 176

 Score =  186 bits (472), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 104/176 (59%)

Query: 1   MALQLQAATPHXXXXXXXXXXXXXXXXXXXVLRAVASSRDGXXXXXXXXXXXXXXXXXXX 60
           MALQLQAATPH                   VLRAVASSRDG                   
Sbjct: 1   MALQLQAATPHPPLPLRSSRRRFAAPPSPLVLRAVASSRDGPSTRLSSPAPAPPRRRRRA 60

Query: 61  XXXXXXXXXXXXXXXXXYDVLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLRI 120
                            YDVLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLRI
Sbjct: 61  SVRARAGAGRGGRGESPYDVLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLRI 120

Query: 121 KHAYNTLMNSESRXXXXXXXXXXXXXXXXXGKSSTTSADEEEPFYGFGTGIPSLLH 176
           KHAYNTLMNSESR                 GKSSTTSADEEEPFYGFGTGIPSLLH
Sbjct: 121 KHAYNTLMNSESRSKYASTSSNTYYSSRTYGKSSTTSADEEEPFYGFGTGIPSLLH 176



>Os02g0804500 Chaperone DnaJ family protein
          Length = 487

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%)

Query: 78  YDVLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLRIKHAYNTLMNSESR 133
           Y  LGVP SA  ++IK AYR+LA ++HPDVNKEP A +KF  I  AY  L + + R
Sbjct: 73  YATLGVPRSASNKDIKAAYRKLARQYHPDVNKEPGATDKFKEISAAYEVLSDEKKR 128



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,583,522
Number of extensions: 90279
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 82
Effective length of database: 12,127,685
Effective search space: 994470170
Effective search space used: 994470170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)