BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0818400 Os03g0818400|AK102675
(142 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0818400 Similar to 40S ribosomal protein S23 (S12) 286 2e-78
Os01g0834500 Similar to 40S ribosomal protein S23 (S12) 286 2e-78
Os10g0350400 Similar to 40S ribosomal protein S23-2 (S12) 189 7e-49
>Os03g0818400 Similar to 40S ribosomal protein S23 (S12)
Length = 142
Score = 286 bits (733), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>Os01g0834500 Similar to 40S ribosomal protein S23 (S12)
Length = 142
Score = 286 bits (733), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61 PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>Os10g0350400 Similar to 40S ribosomal protein S23-2 (S12)
Length = 507
Score = 189 bits (479), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 91/103 (88%), Positives = 94/103 (91%)
Query: 2 GKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 61
KT GMGAGRKLKTHRRNQRWADKAYKKSH GNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 73 AKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 62 NSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGF 104
NSAI KCARVQLVKNGKKIAAFVPNDGCLNFI+EN+ + G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDGI 175
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,168,867
Number of extensions: 203950
Number of successful extensions: 448
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)