BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0817000 Os03g0817000|AK104998
         (443 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0817000  Actin-binding WH2 domain containing protein         894   0.0  
Os03g0298700  Conserved hypothetical protein                       81   1e-15

>Os03g0817000 Actin-binding WH2 domain containing protein
          Length = 443

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/443 (97%), Positives = 434/443 (97%)

Query: 1   SDAGMDNMPGCLSGMTESIEPVSSQEIKERHLDPILDNNERGVEFRRLATPPTANDVAVT 60
           SDAGMDNMPGCLSGMTESIEPVSSQEIKERHLDPILDNNERGVEFRRLATPPTANDVAVT
Sbjct: 1   SDAGMDNMPGCLSGMTESIEPVSSQEIKERHLDPILDNNERGVEFRRLATPPTANDVAVT 60

Query: 61  EHVQLFSDACENIKHQERVSSSETEAEEHQNGTGITDVMDSHPPKPLFLVPSISQQGLQG 120
           EHVQLFSDACENIKHQERVSSSETEAEEHQNGTGITDVMDSHPPKPLFLVPSISQQGLQG
Sbjct: 61  EHVQLFSDACENIKHQERVSSSETEAEEHQNGTGITDVMDSHPPKPLFLVPSISQQGLQG 120

Query: 121 SVFPSDTSDNGEHSSYTSRAVSEDEKTVDDHNAACAMDLHITXXXXXXXXXENGCNQQSH 180
           SVFPSDTSDNGEHSSYTSRAVSEDEKTVDDHNAACAMDLHIT         ENGCNQQSH
Sbjct: 121 SVFPSDTSDNGEHSSYTSRAVSEDEKTVDDHNAACAMDLHITSSSASSHVSENGCNQQSH 180

Query: 181 GESLPVTSVDKVHTSDASCEDNKLKNHFITSEVCSDATNLSASGLLTEEENIHNVEDQYE 240
           GESLPVTSVDKVHTSDASCEDNKLKNHFITSEVCSDATNLSASGLLTEEENIHNVEDQYE
Sbjct: 181 GESLPVTSVDKVHTSDASCEDNKLKNHFITSEVCSDATNLSASGLLTEEENIHNVEDQYE 240

Query: 241 GPLPSEESSGCLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFDSSHEGGYLHAEQPPVMG 300
           GPLPSEESSGCLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFDSSHEGGYLHAEQPPVMG
Sbjct: 241 GPLPSEESSGCLDYPHDDHNSEKEDIHQPDGYAASPGNNNHFDSSHEGGYLHAEQPPVMG 300

Query: 301 WTVRPQMLHPNYGISMEENQFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAHDRSTMRKV 360
           WTVRPQMLHPNYGISMEENQFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAHDRSTMRKV
Sbjct: 301 WTVRPQMLHPNYGISMEENQFEPKVEDHLLIKKPVSIRNIPRNPLVDAVAAHDRSTMRKV 360

Query: 361 SELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKA 420
           SELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKA
Sbjct: 361 SELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKA 420

Query: 421 NAIRQAVGSDDEDGDNWSESSDT 443
           NAIRQAVGSDDEDGDNWSESSDT
Sbjct: 421 NAIRQAVGSDDEDGDNWSESSDT 443



>Os03g0298700 Conserved hypothetical protein
          Length = 1287

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 6/88 (6%)

Query: 341  PRNPLVDAVAAHDRSTMRKVSELVAPTDKSKPNERNLLLEQIRNKTFNLKPVSSAKQPTI 400
            P+ PL   V AHDRS +++   LV P+ K   +E N +LEQI+NK+FNLKPV  AK+P +
Sbjct: 1196 PKYPLFQ-VTAHDRSMLKRAPTLVQPSIKLS-DENNTILEQIKNKSFNLKPVL-AKRPNM 1252

Query: 401  RTPPRASTRNLKVAAIIEKANAIRQAVG 428
               PR    NL+V AI+E+ANAIRQAV 
Sbjct: 1253 MGAPRT---NLQVVAILERANAIRQAVA 1277



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.126    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,748,732
Number of extensions: 743115
Number of successful extensions: 1566
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1564
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 339
Effective length of database: 11,605,545
Effective search space: 3934279755
Effective search space used: 3934279755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)