BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0813700 Os03g0813700|Os03g0813700
         (206 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0813700  Peptidase C1A, papain family protein                301   2e-82
Os03g0787800                                                      245   1e-65
Os03g0788000                                                      165   2e-41
Os03g0778300                                                      110   7e-25
Os04g0477900  Similar to Cysteine proteinase EP-B 1 precurso...    72   4e-13

>Os03g0813700 Peptidase C1A, papain family protein
          Length = 206

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 148/206 (71%)

Query: 1   MSTAALVAWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSTAALVAWL                                                  
Sbjct: 1   MSTAALVAWLARDVSAARAAAHLAAAAASRAARSSAVASRPCARSAAVAARRAARQAAVA 60

Query: 61  XXXXXXXXCYLDDYEPSDDGPDPGAFLTDFDESGDDFTDKDFESDEAIWALYERWCKAYD 120
                   CYLDDYEPSDDGPDPGAFLTDFDESGDDFTDKDFESDEAIWALYERWCKAYD
Sbjct: 61  ASRAAHAVCYLDDYEPSDDGPDPGAFLTDFDESGDDFTDKDFESDEAIWALYERWCKAYD 120

Query: 121 KKRDLAEMTHRFKIFKQNAEALHRSNEGASKYEKIYCGPYCDGFDEQERAEALLKFRHFP 180
           KKRDLAEMTHRFKIFKQNAEALHRSNEGASKYEKIYCGPYCDGFDEQERAEALLKFRHFP
Sbjct: 121 KKRDLAEMTHRFKIFKQNAEALHRSNEGASKYEKIYCGPYCDGFDEQERAEALLKFRHFP 180

Query: 181 RVCEYIESLEIVFPKSREVDSPNQSP 206
           RVCEYIESLEIVFPKSREVDSPNQSP
Sbjct: 181 RVCEYIESLEIVFPKSREVDSPNQSP 206



>Os03g0787800 
          Length = 135

 Score =  245 bits (626), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/129 (89%), Positives = 124/129 (96%)

Query: 78  DDGPDPGAFLTDFDESGDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQ 137
           DDG +PGAFLT+FDES DDFTDKDFESDEAI A+YERWCKAYDKKRDLAEMTHRFKIFK+
Sbjct: 7   DDGHEPGAFLTNFDESADDFTDKDFESDEAIGAMYERWCKAYDKKRDLAEMTHRFKIFKK 66

Query: 138 NAEALHRSNEGASKYEKIYCGPYCDGFDEQERAEALLKFRHFPRVCEYIESLEIVFPKSR 197
           NAEALHRSNEGASKYEKIYCGPYCDGFDEQE+AEALLKFRHFPRVCEY+ES +I FPKSR
Sbjct: 67  NAEALHRSNEGASKYEKIYCGPYCDGFDEQEKAEALLKFRHFPRVCEYVESFKIDFPKSR 126

Query: 198 EVDSPNQSP 206
           E+DSPNQSP
Sbjct: 127 EIDSPNQSP 135



>Os03g0788000 
          Length = 227

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 99/130 (76%), Gaps = 3/130 (2%)

Query: 80  GPDPGAFLTDFD---ESGDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFK 136
           GP+P    TD D   +  D  TDKDFESDEAIWA YERWCKAYDK+RD AEM HRFKIFK
Sbjct: 98  GPEPADDETDKDFETDLVDSVTDKDFESDEAIWAFYERWCKAYDKERDHAEMAHRFKIFK 157

Query: 137 QNAEALHRSNEGASKYEKIYCGPYCDGFDEQERAEALLKFRHFPRVCEYIESLEIVFPKS 196
           + AE +HRSN+ A + EK+  GPYCDGFDEQ+RAE LLKF HF  + E++E  +I FPK 
Sbjct: 158 ETAELVHRSNKDAPEEEKLCFGPYCDGFDEQQRAEFLLKFGHFHGIHEFVEQWKIDFPKP 217

Query: 197 REVDSPNQSP 206
           R++DSPNQSP
Sbjct: 218 RKIDSPNQSP 227



>Os03g0778300 
          Length = 143

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 92  ESGDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQNAEALHRSN-EGAS 150
           E G D + KD ESDEAIWALYERWC+AY+K+RD AEMT  F++FK NAE ++  N E  S
Sbjct: 47  EPGKDISGKDLESDEAIWALYERWCEAYEKERDHAEMTRWFEMFKNNAEYIYSLNSEITS 106

Query: 151 KYEKIYCGPYCDGFDEQERAEALLKFRHFPRVCEYIE 187
           + E++  GPYCDGF+E+++AE L  F HF  V E++E
Sbjct: 107 EAEQLILGPYCDGFNEKDKAEFLNDFGHFNGVHEFVE 143



>Os04g0477900 Similar to Cysteine proteinase EP-B 1 precursor (EC 3.4.22.-)
          Length = 230

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query: 86  FLTDFDESGDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQNAEALHRS 145
           + T+  + G   T KD ESD+A+WALYERWCK+Y+KKRD AEM  RF IFK  A  +H  
Sbjct: 98  YSTEPPDDGKCVTAKDLESDQAVWALYERWCKSYNKKRDHAEMIRRFDIFKLKASLVHSW 157

Query: 146 N 146
           N
Sbjct: 158 N 158



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,851,051
Number of extensions: 237141
Number of successful extensions: 647
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 8
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)