Os03g0813700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C1A, papain family protein.
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Os03g0813700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C1A, papain family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.69 | 0.285 | 11.3 | 0.886 | 0.658 | 0.369 | 0.227 | 3.09 | 0.0955 | 20.1 | 44.44 | 243 | -- | -- |
| 42.83 | 0.307 | 11.2 | 0.856 | 0.663 | -0.33 | 0.178 | -- | 0.107 | 19.6 | 46.78 | 337 | -- | -- |
| 36.82 | 0.283 | 11.3 | 0.884 | 0.657 | 0.362 | -- | 2.99 | 0.0981 | 20.2 | 44.5 | 260 | -- | -- |
| 42.75 | 0.307 | 11.2 | 0.849 | 0.662 | -0.374 | -- | -- | 0.105 | 19.7 | 48.17 | 2984 | -- | -- |
| 58.21 | 0.355 | 11.2 | 0.948 | -- | 0.378 | -- | 2.69 | 0.109 | -- | 43.7 | 420 | -- | -- |
| 43.61 | 0.31 | 11.2 | 0.871 | 0.678 | -- | 0.0862 | -- | 0.115 | 19.9 | -- | -- | -- | -- |
| 43.63 | 0.309 | 11.2 | 0.869 | 0.677 | -- | -- | -- | 0.115 | 19.9 | -- | -- | -- | -- |
| 53.46 | 0.341 | 11.2 | 0.727 | -- | 0.575 | -- | -- | 0.0214 | -- | -0.1301 | 837 | -- | -- |
| 44.8 | 0.312 | 11.3 | -- | 0.673 | -0.732 | -- | -- | -0.158 | 19.9 | 56.67 | 47520 | -- | -- |
| 68.56 | 0.387 | 11.2 | 0.861 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 63.52 | 0.373 | 11.3 | -- | 0.671 | -- | -- | -- | 0.0181 | 20 | -- | -- | -- | -- |
| 69.4 | 0.388 | 11.3 | -- | -- | -0.731 | -- | -- | -0.167 | -- | 56.74 | 47520 | -- | -- |
| 88.14 | 0.438 | 11.2 | -- | -- | -- | -- | -- | 0.0103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.45 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 5 |
| 5 | 33.69 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 6 | 33.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 7 | 33.75 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 10 | 33.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 13 | 33.90 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 24 | 34.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 88 | 34.60 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 10 |
| 101 | 34.65 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 118 | 34.74 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 162 | 34.95 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 194 | 35.07 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 229 | 35.17 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 10 |
| 233 | 35.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 237 | 35.20 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 251 | 35.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 266 | 35.28 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 308 | 35.37 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 356 | 35.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 369 | 35.50 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 386 | 35.53 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 401 | 35.56 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 420 | 35.60 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 446 | 35.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 478 | 35.72 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 489 | 35.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 547 | 35.82 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 589 | 35.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 628 | 35.97 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 672 | 36.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 680 | 36.04 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |