BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0813700 Os03g0813700|Os03g0813700
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50260.1  | chr5:20455605-20456862 FORWARD LENGTH=362           55   2e-08
AT3G48350.1  | chr3:17905752-17907370 FORWARD LENGTH=365           52   2e-07
AT3G48340.1  | chr3:17897739-17899074 FORWARD LENGTH=362           47   7e-06

>AT5G50260.1 | chr5:20455605-20456862 FORWARD LENGTH=362
          Length = 361

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 94  GDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQNAEALHRSNEGASKYE 153
           G DF +KD ES+ ++W LYERW   +   R L E   RF +FK N + +H +N+    Y 
Sbjct: 20  GLDFHNKDVESENSLWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIHETNKKDKSY- 78

Query: 154 KIYCGPYCDGFDEQER 169
           K+    + D   E+ R
Sbjct: 79  KLKLNKFGDMTSEEFR 94



>AT3G48350.1 | chr3:17905752-17907370 FORWARD LENGTH=365
          Length = 364

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 85  AFLTDFDES-GDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQNAEALH 143
           +FL+    S G DF +K+ E++E +W LYERW   +   R   E   RF +F+ N   +H
Sbjct: 10  SFLSLLQASKGFDFDEKELETEENVWKLYERWRGHHSVSRASHEAIKRFNVFRHNVLHVH 69

Query: 144 RSNEGASKYE 153
           R+N+    Y+
Sbjct: 70  RTNKKNKPYK 79



>AT3G48340.1 | chr3:17897739-17899074 FORWARD LENGTH=362
          Length = 361

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 94  GDDFTDKDFESDEAIWALYERWCKAYDKKRDLAEMTHRFKIFKQNAEALHRSNEGASKYE 153
           G D+ DK+ ES+E +  LY+RW   +   R L E   RF +F+ N   +H +N+    Y+
Sbjct: 20  GFDYDDKEIESEEGLSTLYDRWRSHHSVPRSLNEREKRFNVFRHNVMHVHNTNKKNRSYK 79



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,817,386
Number of extensions: 160848
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)