BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0809200 Os03g0809200|AK102250
         (98 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0809200  Similar to Transcription factor EmBP-1 (Fragment)   197   2e-51
Os07g0209800  Similar to HALF-1                                    89   1e-18

>Os03g0809200 Similar to Transcription factor EmBP-1 (Fragment)
          Length = 98

 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  QSFLIDYVFLLHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMV 60
          QSFLIDYVFLLHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMV
Sbjct: 1  QSFLIDYVFLLHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMV 60

Query: 61 QSEGSSVIATLSVKIDTSKDRHGSSSQLNKHTNDDSKG 98
          QSEGSSVIATLSVKIDTSKDRHGSSSQLNKHTNDDSKG
Sbjct: 61 QSEGSSVIATLSVKIDTSKDRHGSSSQLNKHTNDDSKG 98



>Os07g0209800 Similar to HALF-1
          Length = 205

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 11  LHCQQECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAENSQLMDEMVQSEGSSVIAT 70
           L  QQECEEL++KV ELT  NS L +ELD+LKK CEDMEAEN++LM +  Q +G +V  T
Sbjct: 103 LRKQQECEELARKVAELTTENSALRSELDQLKKACEDMEAENTRLMGDKAQYKGPTVTTT 162

Query: 71  LSVKIDTSKDRH 82
           L + ID+SK +H
Sbjct: 163 LGMSIDSSKTQH 174



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.122    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,580,231
Number of extensions: 71185
Number of successful extensions: 521
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 149 (62.0 bits)