BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0804200 Os03g0804200|J065097G18
         (127 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0804200  Plant lipid transfer protein/Par allergen fami...   197   1e-51
Os07g0198300  Plant lipid transfer/seed storage/trypsin-alph...   110   2e-25

>Os03g0804200 Plant lipid transfer protein/Par allergen family protein
          Length = 127

 Score =  197 bits (502), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 33  ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
           ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI
Sbjct: 33  ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92

Query: 93  NVTRAMDLPSGCSIAATFSDCPSTSHFTLYLIIIN 127
           NVTRAMDLPSGCSIAATFSDCPSTSHFTLYLIIIN
Sbjct: 93  NVTRAMDLPSGCSIAATFSDCPSTSHFTLYLIIIN 127



>Os07g0198300 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 207

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 2/84 (2%)

Query: 33  ECADKLMALATCLTYVEEKAT--ARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGF 90
           ECADKLMAL+TCLT+V++ A+  A APT DCC+GL  V+A S+KCLCVL+KDRD+P LG 
Sbjct: 36  ECADKLMALSTCLTFVQDGASGGAAAPTPDCCSGLKAVLAASRKCLCVLIKDRDDPNLGL 95

Query: 91  RINVTRAMDLPSGCSIAATFSDCP 114
           +INVT+A+ LP  C+  A  SDCP
Sbjct: 96  KINVTKALSLPQLCNAPANISDCP 119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,056,610
Number of extensions: 108562
Number of successful extensions: 332
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 4
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)