BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0800800 Os03g0800800|AK065406
(856 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0800800 SMAD/FHA domain containing protein 1781 0.0
Os07g0190900 SMAD/FHA domain containing protein 612 e-175
>Os03g0800800 SMAD/FHA domain containing protein
Length = 856
Score = 1781 bits (4612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/856 (100%), Positives = 856/856 (100%)
Query: 1 MGALAAATSSAIWLVEDDILLKNAVETGASLEALAKGAVCFSRKFTLKEIQDRWNSLLYD 60
MGALAAATSSAIWLVEDDILLKNAVETGASLEALAKGAVCFSRKFTLKEIQDRWNSLLYD
Sbjct: 1 MGALAAATSSAIWLVEDDILLKNAVETGASLEALAKGAVCFSRKFTLKEIQDRWNSLLYD 60
Query: 61 PEISTQASARMVEYENDLSTSNPLKAKVINAKQKDLSFQKRKIDSVKNQYYAMRKRVRNE 120
PEISTQASARMVEYENDLSTSNPLKAKVINAKQKDLSFQKRKIDSVKNQYYAMRKRVRNE
Sbjct: 61 PEISTQASARMVEYENDLSTSNPLKAKVINAKQKDLSFQKRKIDSVKNQYYAMRKRVRNE 120
Query: 121 PCSTVDLGFLIDPCSCTMNGGQCVCGGLDKHSQGHHVVHNTEPGVSTMNCFGQQDGSYNG 180
PCSTVDLGFLIDPCSCTMNGGQCVCGGLDKHSQGHHVVHNTEPGVSTMNCFGQQDGSYNG
Sbjct: 121 PCSTVDLGFLIDPCSCTMNGGQCVCGGLDKHSQGHHVVHNTEPGVSTMNCFGQQDGSYNG 180
Query: 181 GQTMFVGMNGHSFPAKHAETDSMVKGGDIANSVPYGYSDVSQIYEQDAYTRKDPDTNEGN 240
GQTMFVGMNGHSFPAKHAETDSMVKGGDIANSVPYGYSDVSQIYEQDAYTRKDPDTNEGN
Sbjct: 181 GQTMFVGMNGHSFPAKHAETDSMVKGGDIANSVPYGYSDVSQIYEQDAYTRKDPDTNEGN 240
Query: 241 NVSLKGITDFQGSMQFQNLGSSNQCGSKVTESKTIVIADHCGVEHVHFPVNSSSRMQEPG 300
NVSLKGITDFQGSMQFQNLGSSNQCGSKVTESKTIVIADHCGVEHVHFPVNSSSRMQEPG
Sbjct: 241 NVSLKGITDFQGSMQFQNLGSSNQCGSKVTESKTIVIADHCGVEHVHFPVNSSSRMQEPG 300
Query: 301 SLQVIGQPEGSQTPVGSIWTEVDERGTFTLDDDKKIKTDNSDPLALQPNLDGGICAAGLD 360
SLQVIGQPEGSQTPVGSIWTEVDERGTFTLDDDKKIKTDNSDPLALQPNLDGGICAAGLD
Sbjct: 301 SLQVIGQPEGSQTPVGSIWTEVDERGTFTLDDDKKIKTDNSDPLALQPNLDGGICAAGLD 360
Query: 361 HAAITEGDFMDFPYFSNSEDLDLLNGENFLNIPHETNQEDLDDPDHVKNLLHPDEANICY 420
HAAITEGDFMDFPYFSNSEDLDLLNGENFLNIPHETNQEDLDDPDHVKNLLHPDEANICY
Sbjct: 361 HAAITEGDFMDFPYFSNSEDLDLLNGENFLNIPHETNQEDLDDPDHVKNLLHPDEANICY 420
Query: 421 DQTDPDHVKHNVDVSGIISVPTSLEVPYPGRFVECVLNTEDPEIPCNDDVIFPGESPLQC 480
DQTDPDHVKHNVDVSGIISVPTSLEVPYPGRFVECVLNTEDPEIPCNDDVIFPGESPLQC
Sbjct: 421 DQTDPDHVKHNVDVSGIISVPTSLEVPYPGRFVECVLNTEDPEIPCNDDVIFPGESPLQC 480
Query: 481 SATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQPMNLSPPTSE 540
SATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQPMNLSPPTSE
Sbjct: 481 SATDFGQNSEHNTCLVSPATSPASNVEHSNVSDKALIKREDMTNTEPSSQPMNLSPPTSE 540
Query: 541 QKEGSTAPSKGCVPLGAEPSEGPSTAGTLVHCHVDTNDANSCASNLPSISAAVFAEGSPC 600
QKEGSTAPSKGCVPLGAEPSEGPSTAGTLVHCHVDTNDANSCASNLPSISAAVFAEGSPC
Sbjct: 541 QKEGSTAPSKGCVPLGAEPSEGPSTAGTLVHCHVDTNDANSCASNLPSISAAVFAEGSPC 600
Query: 601 HLEQQNNFDDSLSFPLPNSVEVPDHMNYNSHDNQPELGDGAPLQNCIPPHELPDLGLQDP 660
HLEQQNNFDDSLSFPLPNSVEVPDHMNYNSHDNQPELGDGAPLQNCIPPHELPDLGLQDP
Sbjct: 601 HLEQQNNFDDSLSFPLPNSVEVPDHMNYNSHDNQPELGDGAPLQNCIPPHELPDLGLQDP 660
Query: 661 ITTVPVSNQVEECSDNENDVPNYYDLEALILDQDLIPWVQDSEQHPGVSRFQHPESRKSL 720
ITTVPVSNQVEECSDNENDVPNYYDLEALILDQDLIPWVQDSEQHPGVSRFQHPESRKSL
Sbjct: 661 ITTVPVSNQVEECSDNENDVPNYYDLEALILDQDLIPWVQDSEQHPGVSRFQHPESRKSL 720
Query: 721 IRLEQSARSYMNRAIVSKGAFAVIYGLHLRYYMKDSEVTLGRETEDIKVDVDLGKEGRAN 780
IRLEQSARSYMNRAIVSKGAFAVIYGLHLRYYMKDSEVTLGRETEDIKVDVDLGKEGRAN
Sbjct: 721 IRLEQSARSYMNRAIVSKGAFAVIYGLHLRYYMKDSEVTLGRETEDIKVDVDLGKEGRAN 780
Query: 781 KISRRQAVIKMDEAGSFHIKNIGKCSIFVNSKEVPSCKRIILSSDSLIEIKDMRFIFHVN 840
KISRRQAVIKMDEAGSFHIKNIGKCSIFVNSKEVPSCKRIILSSDSLIEIKDMRFIFHVN
Sbjct: 781 KISRRQAVIKMDEAGSFHIKNIGKCSIFVNSKEVPSCKRIILSSDSLIEIKDMRFIFHVN 840
Query: 841 QDAVTQFVTRTPKPEH 856
QDAVTQFVTRTPKPEH
Sbjct: 841 QDAVTQFVTRTPKPEH 856
>Os07g0190900 SMAD/FHA domain containing protein
Length = 865
Score = 612 bits (1578), Expect = e-175, Method: Compositional matrix adjust.
Identities = 380/882 (43%), Positives = 516/882 (58%), Gaps = 65/882 (7%)
Query: 4 LAAATSSAIWLVEDDILLKNAVETGASLEALAKGAVCFSRKFTLKEIQDRWNSLLYDPEI 63
+ +++A W EDD+LLKNAVE GASLE+LAKGAVCFSRKFTL+E+QDRW+SLLYD E
Sbjct: 1 MVTMSAAASWTAEDDVLLKNAVEAGASLESLAKGAVCFSRKFTLQELQDRWSSLLYDSET 60
Query: 64 STQASARMVEYENDLSTSNPLKA-KVINAKQKDLSFQKRKIDSVKNQYYAMRKRVRNEPC 122
S QASA +V+YE +LSTSNP KA K+ ++K LS +KRKI+SVKNQYYAMRKR+ ++PC
Sbjct: 61 SGQASALIVKYETELSTSNPTKAHKLFYVRRKHLSLRKRKIESVKNQYYAMRKRICHDPC 120
Query: 123 STVDLGFLIDPCSCTMNGGQCVCGGLDKHSQGHHVVHNTEPGVSTMNCFGQQDGSYNGGQ 182
D G++I PCSC + G CVC GL + +H++HN +N +G SY GQ
Sbjct: 121 LAADFGYVITPCSCPV-GSDCVCDGLFNLLEDNHLIHNVNQAPDVVNGYGHIGESYADGQ 179
Query: 183 TMFVGMNGHSFPAKHAE--TDSMVKGGDIANSVPYGYSDVSQIYEQDAYTRKDPDTNEGN 240
+ NGH + + ++ G G SDV ++Y + + K+ ++E N
Sbjct: 180 DVHAKDNGHYISHRRHDKAAGTVASDGSTNCESANGCSDVGKLYGYN-FMPKNIQSSERN 238
Query: 241 NVSLKGITDFQGSMQFQNLGSSNQCGSKVTESKTIVIADHCGVEHVHFPVNSSSRMQEPG 300
S K ++D Q +Q Q + + +T K ++ D ++ F NS+ +Q+PG
Sbjct: 239 IASPKDLSDVQDCVQPQQPILCEESANGMTGLKALLNTDQDCIKQNQFSGNSNEILQDPG 298
Query: 301 SLQVIGQPEGSQTPVG------------SIWTEV--DERGTFTLDDDKKIKTDNSDPLAL 346
SL+ + + SQ P + T+V E+ DDKK +T N D +
Sbjct: 299 SLKAMSEHWCSQAPSAPTRKKFQGVNAPDMLTDVHHKEQEILAFSDDKKKETTNIDTFSC 358
Query: 347 QPNLDGGICAAGLDHAAITEGDFMDFPYF--SNSEDLDLLNGENFLNIPHETNQEDLDD- 403
+ N++ G+ +GLD A TEG+ M S ED +LLN EN L+ + N E L D
Sbjct: 359 KVNVENGMSGSGLDDA--TEGEVMHSCLMDASQGEDFELLNSENILDSSLDPNLEGLGDR 416
Query: 404 ----------PDHVKNLLHPDEANICYDQTDPDHVKHNV-DVSGIISVPTSLEVPYPGRF 452
+H+ ++ H A C + TDP H KH+V D+SG+ + T+ EVP+P
Sbjct: 417 HANVILKDISKEHLLDIPHVSSA--CGNNTDPIHEKHDVADISGVDMIYTT-EVPFPCAG 473
Query: 453 VECVLNTEDPEIPCNDDVIFPGESPLQCSATDFGQNSEHNTCLVSPATSPASNVEHSNVS 512
+ C+LNTEDPEIPCNDD+ PG P+ ++T QNS+HN LVS P N N +
Sbjct: 474 IVCILNTEDPEIPCNDDIFTPG--PVASTST-CDQNSQHNMHLVSAKPIPPLNAADLNHT 530
Query: 513 DKALIKREDMTNTEPSSQPMNLSPPTSEQKEGSTAPSKGCVPLGAEPSEGPSTAGTLVHC 572
D +++ +P M L P T EQKE ++ C P
Sbjct: 531 DL-------VSDVQPLLLTMKLEPYTLEQKETLVGLNESCTVRSKSPVMP---------- 573
Query: 573 HVDTNDANSCASNLPSISAAVFAEGSPCHLEQQNNFDDSLSFPLPNSVEVPDHMNYNSHD 632
VD ++AN+C S S AA F + S C L Q FD+ S L + V D MN D
Sbjct: 574 -VDASNANACTSTFHS--AAEFVKKSTCGLVQHECFDNLGSVSLDECIGVLDEMNSKVPD 630
Query: 633 NQPELGDGAPLQNCIPPHELPDLGLQDPITTVPVSNQVEECSDNENDVPNYYDLEALILD 692
+ + A QN I H LPD+ +PITT S+ SD+E+ +PNY+D+EALILD
Sbjct: 631 -ESGISCDATTQNSISAHALPDVEFLNPITTT--SSPEGGGSDSEDGIPNYFDIEALILD 687
Query: 693 QDLIPWVQDSE-QHPGVSRFQHPESRKSLIRLEQSARSYMNRAIVSKGAFAVIYGLHLRY 751
QDLIPW Q+S+ VSRFQ ESRK LIRLE+ ARS NR+I+S GAFAV+YG HL+Y
Sbjct: 688 QDLIPWDQESDFIQLEVSRFQSLESRKDLIRLERGARSNTNRSIMSHGAFAVLYGQHLKY 747
Query: 752 YMKDSEVTLGRETEDIKVDVDLGKEGRANKISRRQAVIKMDEAGSFHIKNIGKCSIFVNS 811
Y+KD EVTLGRET + VD+DLGKEG+AN ISR+QA+IKMD+ GSFHI NIGK IFVNS
Sbjct: 748 YIKDPEVTLGRETSEEHVDIDLGKEGKANTISRQQAIIKMDKGGSFHITNIGKAPIFVNS 807
Query: 812 KEVPSCKRIILSSDSLIEIKDMRFIFHVNQDAVTQFVTRTPK 853
KEVP + L SD+L++I+ M+FIFH+NQDAV Q + R+ +
Sbjct: 808 KEVPCNECTHLISDALLQIRHMKFIFHINQDAVRQHIVRSRR 849
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,973,399
Number of extensions: 1519503
Number of successful extensions: 2904
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2890
Number of HSP's successfully gapped: 2
Length of query: 856
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 747
Effective length of database: 11,344,475
Effective search space: 8474322825
Effective search space used: 8474322825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)