BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0798600 Os03g0798600|AK121716
(154 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0798600 Similar to 40S ribosomal protein S15 (Fragment) 285 1e-77
AK059639 285 1e-77
Os07g0184300 Similar to 40S ribosomal protein S15 (Fragment) 240 2e-64
>Os03g0798600 Similar to 40S ribosomal protein S15 (Fragment)
Length = 154
Score = 285 bits (728), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD
Sbjct: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
Query: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV
Sbjct: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
Query: 136 KHGRPGIGATHSSRFIPLK 154
KHGRPGIGATHSSRFIPLK
Sbjct: 136 KHGRPGIGATHSSRFIPLK 154
>AK059639
Length = 154
Score = 285 bits (728), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD
Sbjct: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
Query: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV
Sbjct: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
Query: 136 KHGRPGIGATHSSRFIPLK 154
KHGRPGIGATHSSRFIPLK
Sbjct: 136 KHGRPGIGATHSSRFIPLK 154
>Os07g0184300 Similar to 40S ribosomal protein S15 (Fragment)
Length = 118
Score = 240 bits (613), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 37 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 96
MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP
Sbjct: 1 MSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVP 60
Query: 97 EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 61 EMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,782,350
Number of extensions: 197030
Number of successful extensions: 432
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)