Os03g0798600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S15 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0798600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 40S ribosomal protein S15 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.89 | 0.415 | 12.8 | 0.544 | 0.84 | 0.39 | 0.615 | -1.22 | -0.208 | 16.5 | 20.11 | 4233 | -- | -- |
| 79.86 | 0.416 | 12.7 | 0.587 | 0.829 | 0.665 | 0.588 | -- | -0.201 | 16.3 | 19.69 | 11657 | -- | -- |
| 78.81 | 0.413 | 12.8 | 0.543 | 0.843 | 0.397 | -- | -1.23 | -0.207 | 16.4 | 20.2 | 4156 | -- | -- |
| 79.96 | 0.416 | 12.7 | 0.833 | 0.859 | 0.578 | -- | -- | -0.134 | 16.2 | 20.2 | 2667 | -- | -- |
| 116.65 | 0.503 | 12.8 | 0.555 | -- | 0.352 | -- | -1.18 | -0.199 | -- | 20.2 | 4577 | -- | -- |
| 86.68 | 0.436 | 12.7 | 1.11 | 0.822 | -- | 0.728 | -- | 0.00729 | 16.5 | -- | -- | -- | -- |
| 88.03 | 0.439 | 12.7 | 1.12 | 0.825 | -- | -- | -- | 0.0112 | 16.4 | -- | -- | -- | -- |
| 118.42 | 0.507 | 12.7 | 0.632 | -- | 0.62 | -- | -- | -0.181 | -- | 18 | 14802 | -- | -- |
| 83.62 | 0.426 | 12.7 | -- | 0.821 | 1.02 | -- | -- | -0.258 | 16.4 | 19.09 | 18483 | -- | -- |
| 124.57 | 0.522 | 12.7 | 1.08 | -- | -- | -- | -- | -0.0106 | -- | -- | -- | -- | -- |
| 120.93 | 0.514 | 12.7 | -- | 0.804 | -- | -- | -- | -0.113 | 16.4 | -- | -- | -- | -- |
| 120.24 | 0.511 | 12.8 | -- | -- | 1.01 | -- | -- | -0.319 | -- | 16.37 | 47520 | -- | -- |
| 155.61 | 0.582 | 12.7 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.35 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 70.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 4 | 70.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 5 | 70.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 8 | 70.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 17 | 71.03 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 29 | 71.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 79 | 72.32 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 103 | 72.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 179 | 73.25 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 217 | 73.56 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 256 | 73.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 257 | 73.84 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 299 | 74.10 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 350 | 74.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 374 | 74.45 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 401 | 74.56 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 435 | 74.69 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 15 |
| 448 | 74.77 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 586 | 75.22 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 616 | 75.37 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 698 | 75.63 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 710 | 75.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 726 | 75.70 | radiation | 40 | 90 | < th | dose independent | sin | 3 | NA |
| 750 | 75.78 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 784 | 75.88 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 803 | 75.92 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 807 | 75.93 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 817 | 75.96 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 871 | 76.14 | humidity | 50 | 10 | > th | dose independent | rect. | 9 | 6 |
| 887 | 76.18 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 893 | 76.19 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 16 |
| 899 | 76.20 | wind | 1 | 30 | > th | dose independent | rect. | 9 | 6 |
| 900 | 76.20 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 902 | 76.20 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 906 | 76.22 | radiation | 1 | 10 | > th | dose independent | rect. | 9 | 6 |
| 920 | 76.27 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 924 | 76.28 | atmosphere | 995 | 10 | > th | dose independent | rect. | 15 | 18 |
| 928 | 76.29 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 932 | 76.30 | radiation | 1 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 940 | 76.32 | humidity | 90 | 10 | < th | dose independent | rect. | 9 | 6 |
| 974 | 76.36 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 21 |
| 982 | 76.39 | radiation | 40 | 10 | < th | dose independent | rect. | 12 | 21 |