BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0798600 Os03g0798600|AK121716
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09500.1 | chr5:2954044-2954850 REVERSE LENGTH=151 256 5e-69
AT5G09490.1 | chr5:2952378-2953183 REVERSE LENGTH=153 248 9e-67
AT5G09510.1 | chr5:2955698-2956554 REVERSE LENGTH=153 243 2e-65
AT1G04270.1 | chr1:1141852-1142960 REVERSE LENGTH=153 241 1e-64
AT5G43640.1 | chr5:17531302-17532370 FORWARD LENGTH=150 228 7e-61
AT5G63070.1 | chr5:25299178-25299660 REVERSE LENGTH=161 186 5e-48
AT1G33850.1 | chr1:12287913-12288210 REVERSE LENGTH=71 67 3e-12
ATCG00820.1 | chrC:84005-84283 REVERSE LENGTH=93 47 5e-06
>AT5G09500.1 | chr5:2954044-2954850 REVERSE LENGTH=151
Length = 150
Score = 256 bits (653), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 122/138 (88%), Positives = 132/138 (95%)
Query: 17 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 76
KKRTF+K+S+RGVDLDALLDMSTDDLV+LFP+R RRRF RGL RKPMALIKKLRKAK +A
Sbjct: 13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72
Query: 77 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 136
PAGEKP VRTHLRNMIIVPEMIGS++GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct: 73 PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132
Query: 137 HGRPGIGATHSSRFIPLK 154
HGRPG+GAT+SSRFIPLK
Sbjct: 133 HGRPGVGATNSSRFIPLK 150
>AT5G09490.1 | chr5:2952378-2953183 REVERSE LENGTH=153
Length = 152
Score = 248 bits (633), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 117/138 (84%), Positives = 130/138 (94%)
Query: 17 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 76
KKRTF+K+S++GVDLDALLDM TDDLV+LFP+R RRR RGL RKPMALIKKLRKAK DA
Sbjct: 15 KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDA 74
Query: 77 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 136
PAGEKPE VRTHLRNM+I+PEMIGSI+GVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+
Sbjct: 75 PAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVR 134
Query: 137 HGRPGIGATHSSRFIPLK 154
HG+PG GATHSSRFIPLK
Sbjct: 135 HGKPGHGATHSSRFIPLK 152
>AT5G09510.1 | chr5:2955698-2956554 REVERSE LENGTH=153
Length = 152
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/139 (89%), Positives = 135/139 (97%)
Query: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
PKKRTF+K++++GVDLDALLDMSTDDLV+LF +R RRRF RGL RKPMALIKKLRKAK++
Sbjct: 14 PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKRE 73
Query: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
APAGEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV
Sbjct: 74 APAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
Query: 136 KHGRPGIGATHSSRFIPLK 154
KHGRPG+GATHSSRFIPLK
Sbjct: 134 KHGRPGVGATHSSRFIPLK 152
>AT1G04270.1 | chr1:1141852-1142960 REVERSE LENGTH=153
Length = 152
Score = 241 bits (615), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 123/139 (88%), Positives = 134/139 (96%)
Query: 16 PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKD 75
PKKRTF+K++++GVDLDALLDMSTDDLV+LF +R RRRF RGL RKPMALIKKLRKAK++
Sbjct: 14 PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKRE 73
Query: 76 APAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 135
AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV
Sbjct: 74 APQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 133
Query: 136 KHGRPGIGATHSSRFIPLK 154
KHGRPG+GATHSSRFIPLK
Sbjct: 134 KHGRPGVGATHSSRFIPLK 152
>AT5G43640.1 | chr5:17531302-17532370 FORWARD LENGTH=150
Length = 149
Score = 228 bits (582), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 119/138 (86%), Positives = 129/138 (93%)
Query: 17 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 76
KKRTF+K+S+RGVDLDALLDMS +DLV+ F +R RRRF RGL RKPMALIKKLRKAK +A
Sbjct: 12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71
Query: 77 PAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 136
PAGEKP VRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct: 72 PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131
Query: 137 HGRPGIGATHSSRFIPLK 154
HGRPG+GAT+SSRFIPLK
Sbjct: 132 HGRPGVGATNSSRFIPLK 149
>AT5G63070.1 | chr5:25299178-25299660 REVERSE LENGTH=161
Length = 160
Score = 186 bits (471), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/144 (64%), Positives = 113/144 (78%), Gaps = 6/144 (4%)
Query: 17 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDA 76
KKRTF+K+S+RG ++DALL MS DL +LF AR RRRF RGLK++P+ LIKKLR+AKK+A
Sbjct: 17 KKRTFKKFSFRGFNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKEA 76
Query: 77 PAGEK--PEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 134
K PE V+THLRNMIIVPEMIGS+VGV+NGK FN++ IKPEMIGHYLAEFS++ K
Sbjct: 77 SDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKK 136
Query: 135 VKHGRPGIGAT----HSSRFIPLK 154
V H RP I S+RFIPL+
Sbjct: 137 VNHHRPRICGCCCFRRSTRFIPLR 160
>AT1G33850.1 | chr1:12287913-12288210 REVERSE LENGTH=71
Length = 70
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 50/58 (86%)
Query: 17 KKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKK 74
KKR F+K+S+RGVDLDALLDMST+DLV+ F +R RRRF RG RKPMALIKKLRKA K
Sbjct: 12 KKRIFKKFSFRGVDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLRKAVK 69
>ATCG00820.1 | chrC:84005-84283 REVERSE LENGTH=93
Length = 92
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 56 RGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVE 115
R LK+ P LRK +K EK E + T R I+P MIG + ++NG+ V
Sbjct: 3 RSLKKNPFVAKHLLRKIEKLNTKAEK-EIIITWSRASTIIPTMIGHTIAIHNGREHLPVY 61
Query: 116 IKPEMIGHYLAEFS 129
I M+GH L EFS
Sbjct: 62 IIDLMVGHKLGEFS 75
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,059,877
Number of extensions: 123664
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 8
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)