Os07g0184300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S15 (Fragment).
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Os07g0184300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S15 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.92 | 0.412 | 11.6 | 0.333 | 1.09 | -0.748 | 0.598 | 0.657 | -0.0284 | 16.9 | 19.7 | 2891 | -- | -- |
| 77.97 | 0.411 | 11.5 | 0.464 | 1.1 | -0.803 | 0.587 | -- | -0.0118 | 16.9 | 20.21 | 2830 | -- | -- |
| 77.68 | 0.41 | 11.6 | 0.322 | 1.09 | -0.747 | -- | 0.691 | -0.0314 | 16.9 | 19.84 | 2860 | -- | -- |
| 78.5 | 0.413 | 11.5 | 0.427 | 1.09 | -0.878 | -- | -- | -0.00822 | 16.9 | 19.9 | 2863 | -- | -- |
| 139.61 | 0.55 | 11.5 | 0.308 | -- | -0.711 | -- | 0.625 | -0.0508 | -- | 19.85 | 3272 | -- | -- |
| 91.33 | 0.448 | 11.5 | 0.892 | 1.06 | -- | 0.734 | -- | 0.2 | 17 | -- | -- | -- | -- |
| 92.71 | 0.451 | 11.5 | 0.894 | 1.07 | -- | -- | -- | 0.203 | 16.9 | -- | -- | -- | -- |
| 140.11 | 0.551 | 11.5 | 0.379 | -- | -0.842 | -- | -- | -0.0349 | -- | 19.81 | 3265 | -- | -- |
| 80.63 | 0.418 | 11.6 | -- | 1.08 | -1.01 | -- | -- | -0.0966 | 16.9 | 18.9 | 14188 | -- | -- |
| 152.47 | 0.577 | 11.5 | 0.854 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 113.75 | 0.499 | 11.5 | -- | 1.05 | -- | -- | -- | 0.104 | 17 | -- | -- | -- | -- |
| 141.11 | 0.553 | 11.6 | -- | -- | -0.982 | -- | -- | -0.0956 | -- | 18.7 | 14856 | -- | -- |
| 171.72 | 0.612 | 11.5 | -- | -- | -- | -- | -- | 0.0811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.71 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 2 | 74.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 3 | 74.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 4 | 74.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 40 | 76.27 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 41 | 76.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 49 | 76.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 11 |
| 66 | 76.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 87 | 76.55 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 107 | 76.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 110 | 76.63 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 123 | 76.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 197 | 77.00 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 241 | 77.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 279 | 77.24 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 285 | 77.27 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 301 | 77.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 307 | 77.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 310 | 77.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 384 | 77.57 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 392 | 77.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 412 | 77.67 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 426 | 77.70 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 447 | 77.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 458 | 77.75 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 474 | 77.77 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 479 | 77.77 | temperature | 15 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 488 | 77.79 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 494 | 77.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 506 | 77.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 508 | 77.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 526 | 77.83 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 538 | 77.84 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 545 | 77.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 554 | 77.86 | wind | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 575 | 77.88 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 619 | 77.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 644 | 77.95 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 670 | 77.98 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 722 | 78.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 749 | 78.06 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 783 | 78.10 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 806 | 78.12 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 845 | 78.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 883 | 78.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 884 | 78.17 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 897 | 78.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 22 |
| 943 | 78.23 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 969 | 78.25 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 978 | 78.26 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 983 | 78.27 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 1000 | 78.28 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 8 |