BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0798000 Os03g0798000|Os03g0798000
         (112 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0798000  Aldehyde oxidase and xanthine dehydrogenase, m...   233   2e-62
Os03g0790900  Similar to Aldehyde oxidase-2                        86   6e-18
Os10g0138100  Similar to Aldehyde oxidase-2                        84   2e-17

>Os03g0798000 Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
           domain containing protein
          Length = 112

 Score =  233 bits (594), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MNDGSIAGGFEIGQGLWTKVKQMTAFALGQLCDDLDKVHVILIQADTLSMIHQGEGWYPT 60
           MNDGSIAGGFEIGQGLWTKVKQMTAFALGQLCDDLDKVHVILIQADTLSMIHQGEGWYPT
Sbjct: 1   MNDGSIAGGFEIGQGLWTKVKQMTAFALGQLCDDLDKVHVILIQADTLSMIHQGEGWYPT 60

Query: 61  MEILDCPGGSGYADRSNHHPKERPHLKDLKQAHLKDLMQSPRSCILLGDVAP 112
           MEILDCPGGSGYADRSNHHPKERPHLKDLKQAHLKDLMQSPRSCILLGDVAP
Sbjct: 61  MEILDCPGGSGYADRSNHHPKERPHLKDLKQAHLKDLMQSPRSCILLGDVAP 112



>Os03g0790900 Similar to Aldehyde oxidase-2
          Length = 1375

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 48/62 (77%), Gaps = 10/62 (16%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQLCDD-----LDKVHVILIQADTLSMIH 52
            MNDGSIA   GG EIGQGLWTKVKQMTAFALGQLCDD     +DKV V  IQADTLSMI 
Sbjct: 1075 MNDGSIAVEVGGVEIGQGLWTKVKQMTAFALGQLCDDGGEGLIDKVRV--IQADTLSMIQ 1132

Query: 53   QG 54
             G
Sbjct: 1133 GG 1134



>Os10g0138100 Similar to Aldehyde oxidase-2
          Length = 1387

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 50/65 (76%), Gaps = 12/65 (18%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQLCDD-----LDKVHVILIQADTLSMIH 52
            +NDGSIA   GG EIGQGLWTKVKQMTAFALGQLCDD     LD V V  IQADTLSMI 
Sbjct: 1080 LNDGSIAVEVGGVEIGQGLWTKVKQMTAFALGQLCDDGGEGLLDNVRV--IQADTLSMI- 1136

Query: 53   QGEGW 57
            QG GW
Sbjct: 1137 QG-GW 1140



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,558,456
Number of extensions: 184450
Number of successful extensions: 325
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)