BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0793900 Os03g0793900|Os03g0793900
         (182 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0793900  Plant lipid transfer/seed storage/trypsin-alph...   263   6e-71
Os07g0175500  Plant lipid transfer/seed storage/trypsin-alph...   115   2e-26

>Os03g0793900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 182

 Score =  263 bits (671), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 133/141 (94%), Positives = 133/141 (94%)

Query: 22  PASGQVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTG 81
           PASGQVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTG
Sbjct: 22  PASGQVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTG 81

Query: 82  NVPFSLPINRNLAISLTKLCNSMSVPLQCRDTASQIXXXXXXXXETSVQPNSAVDPTAMS 141
           NVPFSLPINRNLAISLTKLCNSMSVPLQCRDTASQI        ETSVQPNSAVDPTAMS
Sbjct: 82  NVPFSLPINRNLAISLTKLCNSMSVPLQCRDTASQIPPPAPSPPETSVQPNSAVDPTAMS 141

Query: 142 PSPPIIQGQRPLLLPSSAWRR 162
           PSPPIIQGQRPLLLPSSAWRR
Sbjct: 142 PSPPIIQGQRPLLLPSSAWRR 162



>Os07g0175500 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 203

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 79/106 (74%), Gaps = 10/106 (9%)

Query: 22  PASGQ-VATSCTASLITTFTPCLNFVTGSTNGGGSPTQ---------QCCGSLAEMVRSS 71
           PASGQ VA SCTASLIT+FTPC NF+T S+ GGG             +CC S+A M+ +S
Sbjct: 24  PASGQAVAASCTASLITSFTPCFNFITSSSGGGGGNGTAAGGGAPTAECCQSVAAMINTS 83

Query: 72  ADCACLILTGNVPFSLPINRNLAISLTKLCNSMSVPLQCRDTASQI 117
           A CACL+LTGNVP  +PINR LA++L K CNSMSVPLQC+DT++QI
Sbjct: 84  ASCACLVLTGNVPLGIPINRTLAVTLPKACNSMSVPLQCKDTSAQI 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.128    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,973,270
Number of extensions: 173553
Number of successful extensions: 681
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)