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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0175500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0103) R2 : 0.00101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0147 (0.0217) R2dN8 : 0.0013 R2N8 : 0.00101
σ : 0.194
deviance : 17.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.6 0.19 2.78 0.693 0.0168 4.95 0.163 -30.5 -0.00149 14 995 1442 -- --
16.79 0.192 2.88 0.0786 0.014 -0.16 0.146 -- -0.00141 13.1 996.7 1324 -- --
16.7 0.19 2.78 0.695 0.0168 4.93 -- -30.3 -0.000668 13.8 995.1 1379 -- --
16.64 0.19 2.88 0.0822 0.0122 -0.334 -- -- -0.00377 11.8 996.7 1321 -- --
16.71 0.19 2.78 0.689 -- 4.88 -- -30 -0.0011 -- 995.2 1349 -- --
17.03 0.193 2.88 0.0875 0.0138 -- 0.145 -- -0.00501 13 -- -- -- --
17.12 0.194 2.88 0.0926 0.0144 -- -- -- -0.00435 11.5 -- -- -- --
16.65 0.19 2.88 0.0796 -- -0.344 -- -- 0.00039 -- 996.7 1321 -- --
16.8 0.191 2.88 -- 0.0141 -0.361 -- -- -0.00837 11.6 996.7 1321 -- --
17.13 0.193 2.88 0.0922 -- -- -- -- -0.00451 -- -- -- -- --
17.35 0.195 2.88 -- 0.0135 -- -- -- -0.0147 11.1 -- -- -- --
16.81 0.191 2.88 -- -- -0.362 -- -- -0.00811 -- 996.7 1321 -- --
17.36 0.194 2.88 -- -- -- -- -- -0.0147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.95 radiation 30.0 1440 < th dose dependent rect. 21 1
3 13.96 temperature 10.0 1440 > th dose independent rect. 21 1
6 13.96 temperature 30.0 1440 < th dose independent rect. 21 1
10 13.96 humidity 50.0 1440 > th dose independent rect. 21 1
16 13.96 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 13.96 radiation 1.0 1440 < th dose independent rect. 21 1
37 13.96 temperature 10.0 1440 > th dose independent rect. 22 23
42 13.98 temperature 25.0 30 > th dose independent rect. 20 1
43 14.00 atmosphere 1005.0 30 > th dose dependent rect. 20 1
44 14.01 temperature 20.0 30 > th dose dependent rect. 20 1
45 14.02 wind 3.0 30 > th dose independent rect. 20 1
48 14.04 humidity 80.0 30 > th dose independent rect. 20 1
51 14.05 humidity 90.0 30 < th dose independent rect. 20 1
54 14.06 atmosphere 1005.0 30 > th dose independent rect. 20 1
55 14.07 wind 5.0 30 < th dose independent rect. 20 1
59 14.08 temperature 10.0 30 > th dose independent rect. 20 1
61 14.08 temperature 30.0 30 < th dose independent rect. 20 1
62 14.08 humidity 50.0 30 > th dose independent rect. 20 1
65 14.08 atmosphere 995.0 30 > th dose independent rect. 20 1
67 14.08 atmosphere 1010.0 30 < th dose independent rect. 20 1
69 14.08 radiation 1.0 30 < th dose independent rect. 20 1
74 14.08 precipitation 0.1 30 < th dose independent rect. 20 1
75 14.08 temperature 10.0 30 > th dose independent rect. 21 23
76 14.08 wind 1.0 30 > th dose dependent rect. 20 1
77 14.08 radiation 1.0 30 < th dose dependent rect. 20 1
84 14.08 precipitation 0.1 30 < th dose dependent rect. 20 1
85 14.09 humidity 50.0 30 > th dose dependent rect. 20 1
87 14.11 wind 9.0 30 < th dose dependent rect. 20 1
95 14.20 humidity 90.0 30 < th dose dependent rect. 20 1
96 14.22 atmosphere 1015.0 30 < th dose dependent rect. 20 1
103 14.37 temperature 30.0 30 < th dose dependent rect. 20 1
107 14.45 wind 9.0 1440 < th dose independent rect. 21 1
109 14.45 wind 9.0 30 < th dose independent rect. 21 23
170 15.81 temperature 25.0 30 > th dose independent rect. 20 3
171 15.82 atmosphere 1005.0 10 > th dose dependent rect. 20 3
174 15.86 atmosphere 1000.0 10 < th dose dependent rect. 8 2
179 15.88 humidity 90.0 10 < th dose independent rect. 20 3
191 15.90 atmosphere 995.0 30 > th dose independent rect. 21 23
193 15.96 wind 9.0 1440 < th dose independent rect. 23 1
194 15.96 temperature 10.0 1440 > th dose independent rect. 23 1
197 15.96 temperature 30.0 1440 < th dose independent rect. 23 1
201 15.96 humidity 50.0 1440 > th dose independent rect. 23 1
212 15.96 atmosphere 995.0 1440 > th dose independent rect. 23 1
213 15.96 radiation 1.0 1440 < th dose independent rect. 23 1
233 15.96 temperature 10.0 1440 > th dose independent rect. 24 23
236 15.96 radiation 1.0 1440 < th dose dependent rect. 23 1
241 15.97 humidity 90.0 30 < th dose independent rect. 22 1
245 15.98 temperature 25.0 30 > th dose independent rect. 22 1
246 15.98 temperature 25.0 30 > th dose dependent rect. 22 1
247 15.98 humidity 90.0 30 < th dose dependent rect. 22 1
248 15.98 atmosphere 1005.0 30 > th dose dependent rect. 22 1
250 15.99 atmosphere 1005.0 30 > th dose independent rect. 22 1
251 15.99 temperature 15.0 30 > th dose dependent rect. 22 1
261 16.01 wind 1.0 30 > th dose independent rect. 22 1
262 16.01 wind 3.0 30 < th dose independent rect. 22 1
266 16.01 temperature 10.0 30 > th dose independent rect. 22 1
268 16.01 temperature 30.0 30 < th dose independent rect. 22 1
269 16.01 humidity 50.0 30 > th dose independent rect. 22 1
272 16.01 atmosphere 995.0 30 > th dose independent rect. 22 1
274 16.01 atmosphere 1010.0 30 < th dose independent rect. 22 1
276 16.01 radiation 1.0 30 < th dose independent rect. 22 1
281 16.01 precipitation 0.1 30 < th dose independent rect. 22 1
283 16.01 temperature 10.0 30 > th dose independent rect. 23 23
284 16.01 wind 9.0 30 < th dose dependent rect. 22 1
285 16.01 radiation 1.0 30 < th dose dependent rect. 22 1
290 16.01 precipitation 0.1 30 < th dose dependent rect. 22 1
292 16.02 wind 5.0 30 < th dose dependent rect. 22 1
295 16.03 wind 1.0 30 > th dose dependent rect. 22 1
296 16.03 humidity 50.0 30 > th dose dependent rect. 22 1
303 16.05 atmosphere 1005.0 30 > th dose independent rect. 20 3
305 16.05 temperature 20.0 30 > th dose dependent rect. 20 3
306 16.05 atmosphere 1000.0 270 < th dose dependent rect. 6 4
312 16.07 atmosphere 1015.0 30 < th dose dependent rect. 22 1
314 16.09 precipitation 0.1 30 < th dose independent rect. 21 23
317 16.09 precipitation 0.1 30 < th dose dependent rect. 21 23
320 16.10 temperature 30.0 30 < th dose dependent rect. 22 1
344 16.16 atmosphere 995.0 10 > th dose independent rect. 12 8
354 16.17 wind 3.0 10 > th dose independent rect. 20 3
356 16.17 atmosphere 1010.0 10 < th dose independent rect. 12 8
358 16.17 radiation 20.0 10 < th dose dependent rect. 21 23
369 16.19 wind 9.0 10 < th dose independent rect. 12 8
370 16.19 temperature 10.0 10 > th dose independent rect. 12 8
373 16.19 temperature 10.0 10 > th dose independent rect. 20 16
374 16.19 atmosphere 995.0 10 > th dose independent rect. 20 16
375 16.19 precipitation 0.1 30 < th dose independent rect. 20 16
376 16.19 wind 9.0 30 < th dose independent rect. 23 23
380 16.19 precipitation 0.1 30 < th dose dependent rect. 20 16
383 16.20 wind 1.0 10 > th dose independent rect. 12 8
386 16.20 precipitation 0.1 10 < th dose independent rect. 12 8
392 16.20 precipitation 0.1 10 < th dose dependent rect. 12 8
400 16.21 wind 9.0 10 < th dose independent rect. 20 16
409 16.22 temperature 10.0 1440 > th dose independent rect. 13 8
413 16.22 temperature 10.0 1440 > th dose independent rect. 21 16
416 16.22 atmosphere 995.0 1440 > th dose independent rect. 21 16
418 16.22 temperature 25.0 720 > th dose dependent rect. 24 8
462 16.24 atmosphere 1015.0 10 < th dose independent rect. 20 16
470 16.25 atmosphere 1000.0 10 < th dose independent rect. 8 2
472 16.25 humidity 80.0 90 > th dose independent rect. 19 4
485 16.25 temperature 25.0 720 > th dose dependent rect. 22 11
487 16.26 atmosphere 1000.0 90 < th dose independent rect. 8 1
503 16.27 precipitation 0.1 270 < th dose independent rect. 19 2
506 16.27 precipitation 0.1 270 < th dose dependent rect. 19 2
513 16.28 radiation 40.0 10 < th dose independent rect. 20 16
540 16.29 temperature 10.0 10 > th dose dependent rect. 12 8
542 16.29 temperature 10.0 10 > th dose dependent rect. 24 20
559 16.30 wind 5.0 30 < th dose independent rect. 20 3
566 16.30 radiation 10.0 10 < th dose independent rect. 21 23
591 16.31 atmosphere 1015.0 30 < th dose independent rect. 21 23
600 16.32 precipitation 0.1 1440 < th dose independent rect. 21 1
611 16.32 temperature 30.0 30 < th dose independent rect. 20 16
619 16.32 precipitation 0.1 1440 < th dose dependent rect. 21 1
627 16.32 radiation 20.0 10 < th dose dependent rect. 23 21
649 16.33 wind 7.0 90 < th dose independent rect. 23 20
650 16.33 radiation 10.0 10 < th dose independent rect. 23 21
682 16.34 wind 3.0 30 > th dose independent rect. 20 16
690 16.34 temperature 15.0 90 > th dose independent rect. 23 20
710 16.35 precipitation 0.1 270 < th dose independent rect. 7 14
711 16.35 humidity 90.0 30 < th dose independent rect. 20 16
719 16.35 atmosphere 995.0 30 > th dose dependent rect. 12 8
723 16.35 precipitation 0.1 270 < th dose dependent rect. 7 14
724 16.35 temperature 10.0 10 > th dose dependent rect. 20 16
746 16.36 atmosphere 1000.0 10 > th dose independent rect. 24 20
761 16.37 precipitation 0.1 30 < th dose independent rect. 20 3
772 16.37 humidity 50.0 10 > th dose independent rect. 20 16
774 16.37 wind 7.0 10 < th dose independent rect. 24 20
781 16.37 precipitation 0.1 30 < th dose dependent rect. 20 3
788 16.37 wind 1.0 30 > th dose dependent rect. 20 16
805 16.38 atmosphere 995.0 90 > th dose independent rect. 23 20
815 16.38 radiation 1.0 1440 < th dose dependent rect. 21 3
831 16.39 temperature 10.0 1440 > th dose independent rect. 21 3
834 16.39 temperature 30.0 1440 < th dose independent rect. 21 3
838 16.39 humidity 50.0 1440 > th dose independent rect. 21 3
846 16.39 atmosphere 995.0 1440 > th dose independent rect. 21 3
847 16.39 radiation 1.0 1440 < th dose independent rect. 21 3
870 16.39 atmosphere 1015.0 10 < th dose independent rect. 20 4
871 16.39 radiation 40.0 10 < th dose independent rect. 13 7
873 16.39 humidity 50.0 10 > th dose independent rect. 12 8
882 16.39 temperature 10.0 1440 > th dose independent rect. 24 21
892 16.39 radiation 20.0 43200 < th dose dependent rect. 21 3
901 16.39 wind 9.0 30 < th dose dependent rect. 12 8
906 16.40 temperature 10.0 30 > th dose independent rect. 20 3
908 16.40 temperature 30.0 30 < th dose independent rect. 20 3
909 16.40 humidity 50.0 30 > th dose independent rect. 20 3
915 16.40 radiation 1.0 30 < th dose independent rect. 20 3
935 16.40 radiation 1.0 30 < th dose dependent rect. 20 3
947 16.40 radiation 30.0 270 < th dose dependent rect. 21 10
978 16.41 radiation 10.0 270 < th dose independent rect. 21 10
988 16.41 atmosphere 995.0 270 > th dose independent rect. 21 22