BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0175500 Os07g0175500|Os07g0175500
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G48140.1 | chr2:19686442-19687444 FORWARD LENGTH=201 73 8e-14
AT3G22620.1 | chr3:8008615-8009415 FORWARD LENGTH=204 70 1e-12
AT1G05450.2 | chr1:1600004-1601086 FORWARD LENGTH=206 65 3e-11
>AT2G48140.1 | chr2:19686442-19687444 FORWARD LENGTH=201
Length = 200
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 34 CTASLITSFTPCFNFIXXXXXXXXXXXXXXXXXXXXXECCQSVAAMINTSASCACLVLTG 93
CT+S+I++FTPC NFI CC S+ + NT CACL+LT
Sbjct: 27 CTSSMISTFTPCLNFITGSSGGSVTPTA---------GCCDSLKTLTNTGMGCACLILTA 77
Query: 94 NVPL--GIPINRTLAVTLPKACNSMSVPLQCK 123
NVPL G INRTLA+ LP+AC VP+QC+
Sbjct: 78 NVPLPTGF-INRTLALALPRACKMGGVPIQCQ 108
>AT3G22620.1 | chr3:8008615-8009415 FORWARD LENGTH=204
Length = 203
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 34 CTASLITSFTPCFNFIXXXXXXXXXXXXXXXXXXXXXECCQSVAAMINTSASCACLVLTG 93
CT S++T+ +PC FI +CC S+ ++ C CL++TG
Sbjct: 29 CTPSMMTTVSPCMGFITNSSSNGTSPSS---------DCCNSLRSLTTGGMGCLCLIVTG 79
Query: 94 NVPLGIPINRTLAVTLPKACNSMSVPLQCK 123
VP IPINRT AV+LP+ACN VPLQC+
Sbjct: 80 TVPFNIPINRTTAVSLPRACNMPRVPLQCQ 109
>AT1G05450.2 | chr1:1600004-1601086 FORWARD LENGTH=206
Length = 205
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 34 CTASLITSFTPCFNFIXXXXXXXXXXXXXXXXXXXXXECCQSVAAMINTSASCACLVLTG 93
C+ S+++S T C +F+ +CC ++ ++ T C CL++T
Sbjct: 33 CSPSMLSSVTGCTSFLTGGGSFPTS------------DCCGALKSLTGTGMDCLCLIVTA 80
Query: 94 NVPLGIPINRTLAVTLPKACNSMSVPLQCKDTSAQI 129
VP+ IPINRTLA++LP+AC VP+QCK ++A +
Sbjct: 81 GVPISIPINRTLAISLPRACGIPGVPVQCKASAAPL 116
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.128 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,743,591
Number of extensions: 36841
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 6
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)