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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0793900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.76 (0.0712) R2 : 0.23
β1 : -2.76 (0.435) R2dD : 0.312 R2D : -0.532
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.42 (0.186) R2dE : 0.155 R2E : -0.0279
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.2 (1.1) R2dD*E : 0.621 R2D*E : -0.116
γ1 : -0.636 (0.172) R2dN8 : 0.0639 R2N8 : -0.133
σ : 1.06
deviance : 518.05
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.49
memory length : 2148
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.08
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.27 1.06 4.74 -2.54 0.413 1.65 0.711 -12 -0.592 2.32 21.6 1154 5.94 --
600.1 1.14 4.39 0.407 0.543 0.876 -0.661 -- 0.234 5.55 -3.431 10377 8.82 --
505.43 1.05 4.75 -2.72 0.54 1.48 -- -11 -0.625 3.45 21.7 1339 5.63 --
599.12 1.14 4.4 0.394 0.517 1.03 -- -- 0.27 4.72 11.14 8224 13.3 --
518.05 1.06 4.76 -2.76 -- 1.42 -- -10.2 -0.636 -- 21.49 2148 5.08 --
614.01 1.16 4.34 0.882 0.606 -- -0.679 -- 0.538 4.55 -- -- -- --
614.88 1.16 4.34 0.885 0.601 -- -- -- 0.541 4.06 -- -- -- --
604.53 1.15 4.43 0.31 -- 1.3 -- -- 0.266 -- -11.97 7963 7.99 --
602.4 1.14 4.42 -- 0.508 1.21 -- -- 0.159 4.62 11.02 9724 13 --
634.57 1.18 4.34 0.91 -- -- -- -- 0.557 -- -- -- -- --
635.54 1.18 4.36 -- 0.618 -- -- -- 0.442 4.04 -- -- -- --
602.77 1.14 4.41 -- -- 1.61 -- -- 0.19 -- -59.26 8315 11.2 --
656.4 1.2 4.37 -- -- -- -- -- 0.456 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 463.20 radiation 10 43200 > th dose independent rect. 5 2
29 468.54 wind 1 43200 < th dose independent rect. 21 5
44 469.89 wind 1 43200 < th dose independent rect. 19 7
46 470.01 radiation 10 43200 > th dose independent sin 10 NA
49 470.70 wind 1 43200 < th dose dependent rect. 19 7
50 471.07 wind 1 43200 < th dose dependent rect. 16 10
64 471.21 humidity 90 43200 < th dose independent rect. 19 6
66 471.47 radiation 10 43200 < th dose independent rect. 10 4
67 471.87 humidity 90 43200 < th dose independent rect. 20 4
71 472.02 radiation 20 43200 < th dose independent rect. 11 2
72 472.03 wind 1 43200 < th dose dependent rect. 21 5
77 472.38 radiation 30 43200 < th dose dependent rect. 11 2
114 473.13 temperature 30 43200 > th dose dependent rect. 12 3
115 473.15 temperature 30 43200 > th dose dependent rect. 12 1
123 473.40 temperature 30 43200 > th dose dependent rect. 8 7
138 473.46 wind 1 43200 > th dose independent rect. 21 5
139 473.48 radiation 20 43200 < th dose dependent rect. 5 10
140 473.48 radiation 20 43200 < th dose dependent rect. 17 21
146 473.54 radiation 20 43200 < th dose dependent rect. 3 12
147 473.54 radiation 20 43200 < th dose dependent rect. 19 20
213 473.77 temperature 30 43200 > th dose dependent sin 6 NA
216 473.80 humidity 90 43200 > th dose independent rect. 20 5
305 474.31 temperature 30 43200 > th dose independent rect. 8 8
340 474.46 temperature 30 43200 > th dose independent sin 5 NA
357 474.50 wind 1 43200 > th dose independent rect. 19 7
393 474.54 temperature 30 43200 > th dose independent rect. 10 1
397 474.59 radiation 20 43200 < th dose dependent sin 4 NA
401 474.63 radiation 1 43200 > th dose dependent rect. 11 3
406 474.66 radiation 1 43200 > th dose dependent rect. 12 1
436 474.77 temperature 30 43200 < th dose independent rect. 10 1
437 474.78 temperature 30 43200 < th dose independent rect. 20 20
441 474.79 temperature 30 43200 < th dose independent rect. 24 16
454 474.80 temperature 30 43200 < th dose independent rect. 8 8
466 474.84 temperature 30 43200 < th dose independent sin 5 NA
471 474.87 radiation 10 43200 < th dose independent rect. 7 8
571 475.02 temperature 30 43200 > th dose independent rect. 10 3
606 475.05 temperature 30 43200 > th dose dependent no NA NA
730 475.11 temperature 30 43200 > th dose independent rect. 12 1
745 475.17 radiation 40 43200 > th dose independent rect. 13 21
802 475.28 radiation 40 43200 > th dose independent rect. 11 23
824 475.32 temperature 30 43200 > th dose independent rect. 12 3
828 475.33 temperature 30 43200 < th dose independent rect. 10 3
831 475.34 radiation 20 43200 > th dose independent rect. 9 4
836 475.36 radiation 40 43200 > th dose independent sin 12 NA
897 475.51 temperature 30 43200 < th dose independent rect. 12 1
908 475.52 temperature 30 43200 > th dose independent rect. 12 23
949 475.57 temperature 30 43200 > th dose independent rect. 14 23
956 475.61 temperature 30 43200 > th dose independent no NA NA