BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0793900 Os03g0793900|Os03g0793900
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G48140.1 | chr2:19686442-19687444 FORWARD LENGTH=201 92 2e-19
AT1G05450.2 | chr1:1600004-1601086 FORWARD LENGTH=206 83 7e-17
AT3G22620.1 | chr3:8008615-8009415 FORWARD LENGTH=204 78 3e-15
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 58 3e-09
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 52 1e-07
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 52 2e-07
>AT2G48140.1 | chr2:19686442-19687444 FORWARD LENGTH=201
Length = 200
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
Query: 26 QVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTGNVPF 85
Q++T CT+S+I+TFTPCLNF+TGS+ G +PT CC SL + + CACLILT NVP
Sbjct: 22 QISTPCTSSMISTFTPCLNFITGSSGGSVTPTAGCCDSLKTLTNTGMGCACLILTANVP- 80
Query: 86 SLP---INRNLAISLTKLCNSMSVPLQCR 111
LP INR LA++L + C VP+QC+
Sbjct: 81 -LPTGFINRTLALALPRACKMGGVPIQCQ 108
>AT1G05450.2 | chr1:1600004-1601086 FORWARD LENGTH=206
Length = 205
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 26 QVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTGNVPF 85
Q+ T C+ S++++ T C +F+TG GG PT CCG+L + + DC CLI+T VP
Sbjct: 28 QINTPCSPSMLSSVTGCTSFLTG---GGSFPTSDCCGALKSLTGTGMDCLCLIVTAGVPI 84
Query: 86 SLPINRNLAISLTKLCNSMSVPLQCRDTASQI 117
S+PINR LAISL + C VP+QC+ +A+ +
Sbjct: 85 SIPINRTLAISLPRACGIPGVPVQCKASAAPL 116
>AT3G22620.1 | chr3:8008615-8009415 FORWARD LENGTH=204
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 26 QVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTGNVPF 85
Q + CT S++TT +PC+ F+T S++ G SP+ CC SL + C CLI+TG VPF
Sbjct: 24 QPLSQCTPSMMTTVSPCMGFITNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPF 83
Query: 86 SLPINRNLAISLTKLCNSMSVPLQCR-DTASQIXXXXXXXXETSVQPNSAVDPTAMSPSP 144
++PINR A+SL + CN VPLQC+ + A S+ P DP P+P
Sbjct: 84 NIPINRTTAVSLPRACNMPRVPLQCQANIAPAAAPGPAATFGPSMSPGPETDPIVPEPTP 143
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 29 TSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILT-GNVPFSL 87
+SCT +LI+ +PCLN++TG++ SP QQCC L+ +V+SS DC C +L G +
Sbjct: 26 SSCTNALIS-MSPCLNYITGNST---SPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLGI 81
Query: 88 PINRNLAISLTKLCNSMSVPL-QCRDTASQIXXXXXXXXETSVQPNSAVDPTAMSPSPPI 146
+N+ A+ L + CN + P+ +C E+ PNS+ P S + P+
Sbjct: 82 NVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPAES---PNSS-GPGNGSKTVPV 137
Query: 147 IQGQRP 152
+G P
Sbjct: 138 GEGDGP 143
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 27/122 (22%)
Query: 25 GQVATSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILTGNVP 84
Q ++SC ++L TT +PCL+++TG++ +P+Q CC L +++SS C C + +P
Sbjct: 24 AQPSSSCVSTL-TTLSPCLSYITGNST---TPSQPCCSRLDSVIKSSPQCICSAVNSPIP 79
Query: 85 -FSLPINRNLAISLTKLCNSMSVPL-QCRDTASQIXXXXXXXXETSVQPNSAVDPTAMSP 142
L INR A+ L CN + PL QC N+A PTA P
Sbjct: 80 NIGLNINRTQALQLPNACNIQTPPLTQC---------------------NAATGPTAQPP 118
Query: 143 SP 144
+P
Sbjct: 119 AP 120
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 29 TSCTASLITTFTPCLNFVTGSTNGGGSPTQQCCGSLAEMVRSSADCACLILT-GNVPFSL 87
+SCT LI+ PCL+F+T +T+ P+QQCC LA +VR S++C C +L G +
Sbjct: 24 SSCTNVLIS-MAPCLSFITQNTS---LPSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGI 79
Query: 88 PINRNLAISLTKLCN 102
+N A++L K C+
Sbjct: 80 NVNETQALALPKACH 94
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.128 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,905,212
Number of extensions: 96547
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 13
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)