BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0790600 Os03g0790600|AK103648
         (448 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0790600  Peptidase M28 domain containing protein             845   0.0  
Os01g0743300  Protease-associated PA domain containing protein    359   3e-99
Os01g0740500  Protease-associated PA domain containing protein    332   5e-91

>Os03g0790600 Peptidase M28 domain containing protein
          Length = 448

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/448 (92%), Positives = 413/448 (92%)

Query: 1   MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
           MPVSGKTASAIIRTLGGPALPADWQ                   NFTYQEDRKMGMIQDI
Sbjct: 1   MPVSGKTASAIIRTLGGPALPADWQTGVGLPVDVGGVGPGPTLVNFTYQEDRKMGMIQDI 60

Query: 61  FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120
           FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL
Sbjct: 61  FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120

Query: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180
           CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR
Sbjct: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180

Query: 181 QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGYHT 240
           QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGYHT
Sbjct: 181 QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGYHT 240

Query: 241 ALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSM 300
           ALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSM
Sbjct: 241 ALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSM 300

Query: 301 MENSKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNISDGYSXXXXXXXXXXXXXXXXSFL 360
           MENSKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNISDGYS                SFL
Sbjct: 301 MENSKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNISDGYSLMRRRLLNDRLLLAERSFL 360

Query: 361 QADGLQGRGWFKHLMYSPPEDYESKLSFFPGVADAISRSSNRSAKEQQAAVRHEVRKISR 420
           QADGLQGRGWFKHLMYSPPEDYESKLSFFPGVADAISRSSNRSAKEQQAAVRHEVRKISR
Sbjct: 361 QADGLQGRGWFKHLMYSPPEDYESKLSFFPGVADAISRSSNRSAKEQQAAVRHEVRKISR 420

Query: 421 AIQRAADVLRGEFSNRNESLYSSLSVAP 448
           AIQRAADVLRGEFSNRNESLYSSLSVAP
Sbjct: 421 AIQRAADVLRGEFSNRNESLYSSLSVAP 448



>Os01g0743300 Protease-associated PA domain containing protein
          Length = 728

 Score =  359 bits (921), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/441 (42%), Positives = 274/441 (62%), Gaps = 11/441 (2%)

Query: 1   MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
           +PVSG+   AI++ +GG   P DWQ                   N TY  +  M  IQ++
Sbjct: 292 LPVSGRDGEAILQLIGGDVAPKDWQGGDGSPVYRLGPGPAVL--NLTYIGNETMATIQNV 349

Query: 61  FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120
            ++I+G EEP+RY+ILGNHRDAWT+GAVDPNSGT+ALL++A+R   + + GW PRRTIIL
Sbjct: 350 ISVIEGKEEPERYIILGNHRDAWTFGAVDPNSGTAALLELAQRFSELQKKGWRPRRTIIL 409

Query: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180
           C+WDAEE+G++GSTEWVEEN   L S+ VAYLNVD AV G G +A +TPQLD LL + ++
Sbjct: 410 CNWDAEEYGLVGSTEWVEENRAMLTSRTVAYLNVDSAVYGAGFYASATPQLDELLKEASK 469

Query: 181 QVKDPDVEGKTVHDTW--NKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGY 238
           QV++PD E ++++D W  +  +  I I R+    SD++ F+ H GIP +D+  G E+  Y
Sbjct: 470 QVQNPDNETQSLYDLWMASDSSSMIKIGRIGGGGSDYSAFVQHIGIPSIDISMGSEYAVY 529

Query: 239 HTALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHA-NAF 297
           H+  D + WMEK GDPLF RHVA   +WGL+ALRL+D+ +LPF+Y TYA +L++ A +  
Sbjct: 530 HSLYDDFVWMEKFGDPLFRRHVAAASMWGLVALRLSDEEILPFNYSTYAVELEKGAIDIN 589

Query: 298 SSMMENSKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNISDGY--SXXXXXXXXXXXXXX 355
             ++        L +SI +   A L+   E K LQ + + + +  +              
Sbjct: 590 KRLLGVPVSSSPLQKSIAEFKRAALQMDSEMKALQTRKVWNPWRNNPLKVRDLNERLMMT 649

Query: 356 XXSFLQADGLQGRGWFKHLMYSPP--EDYESKLSFFPGVADAISRSSNRSAKEQQAAVRH 413
             +F   +GL GR W+KHL+Y+P   +DY +++  +PGV DAI  +   +  E   +V+H
Sbjct: 650 ERAFTDREGLSGRPWYKHLIYAPSLHDDYGAQV--YPGVDDAIQMAERTNTSESWRSVQH 707

Query: 414 EVRKISRAIQRAADVLRGEFS 434
           E+ +I+R I +A+ VL G  +
Sbjct: 708 EIYRIARVINQASLVLSGGLT 728



>Os01g0740500 Protease-associated PA domain containing protein
          Length = 713

 Score =  332 bits (850), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/445 (40%), Positives = 253/445 (56%), Gaps = 37/445 (8%)

Query: 1   MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
           +PVS + A+ I   LGG A PADWQ                   N TY  +  M  I+++
Sbjct: 295 LPVSARDAAEIHAALGGDAAPADWQGREGSPVYRLGPGPAIL--NLTYTGNDTMATIENV 352

Query: 61  FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120
           FA+I+G EEPDRYVILGNHRDAWT+GA DPNSGT+A++++A+RL ++ + GW PRRTII 
Sbjct: 353 FAVIEGAEEPDRYVILGNHRDAWTFGASDPNSGTAAMIELAQRLSVLQKQGWRPRRTIIF 412

Query: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180
           CSWDAEE+G+ GSTEWVEEN E L S+AVAYLNVD +V G                    
Sbjct: 413 CSWDAEEYGLTGSTEWVEENREMLSSRAVAYLNVDVSVVG-------------------- 452

Query: 181 QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGK----EFP 236
            V+DPD   + V+D+W K      I RL    SDF+ F+ H GIP   + +G+     +P
Sbjct: 453 PVQDPDNSSQAVYDSWVKSNISPLIGRLGHGGSDFSAFVQHVGIPSTSMGFGEGKGPGYP 512

Query: 237 GYHTALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANA 296
            YH+  D + WMEK GDP F RH A   IWG++ALRLAD+ +LPF+Y +Y  +L+    A
Sbjct: 513 IYHSLYDDFVWMEKFGDPGFSRHAAAASIWGMMALRLADEEILPFNYMSYPVELE----A 568

Query: 297 FSSMMEN-----SKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNISDGYSXXXXXXXXXX 351
           ++ ++EN     +     L+ +I  L  A  +   E K+LQ Q  S+             
Sbjct: 569 YTKVVENEVRGTAISCSPLHNAIRALKTAATKVNGERKELQRQLSSNQLKKDSMKIRSLN 628

Query: 352 --XXXXXXSFLQADGLQGRGWFKHLMYSPPEDYESKLSFFPGVADAISRSSNRSAKEQQA 409
                   +F   +GL  R WFKHL+Y P E  + + + +PGV +AI+ +   +  E   
Sbjct: 629 DRLMQAERAFTNREGLFKREWFKHLVYGPSEQNDWESASYPGVENAIASARKENTTESWK 688

Query: 410 AVRHEVRKISRAIQRAADVLRGEFS 434
            V+HE+ +++RAI +A+ VL G  +
Sbjct: 689 FVQHEIHRVARAITQASVVLAGSLT 713



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,259,705
Number of extensions: 559444
Number of successful extensions: 1140
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1131
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)