Os03g0790600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase M28 domain containing protein.
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Os03g0790600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase M28 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.4 | 0.584 | 8.99 | -1.83 | 1.41 | 1.58 | -1.1 | 1.52 | -0.376 | 4.04 | 75.68 | 828 | -- | -- |
| 154.87 | 0.58 | 8.95 | -1.69 | 1.69 | 1.56 | -1.05 | -- | -0.285 | 4.16 | 74.21 | 968 | -- | -- |
| 153.18 | 0.576 | 8.97 | -1.84 | 1.73 | 1.46 | -- | 1.53 | -0.318 | 4.36 | 74.55 | 1002 | -- | -- |
| 157.71 | 0.585 | 8.95 | -1.68 | 1.74 | 1.5 | -- | -- | -0.274 | 4.32 | 74.26 | 1000 | -- | -- |
| 190.91 | 0.644 | 8.98 | -1.77 | -- | 1.86 | -- | 0.778 | -0.331 | -- | 76 | 502 | -- | -- |
| 207.3 | 0.675 | 8.96 | -1.86 | 1.85 | -- | -0.533 | -- | -0.416 | 5.63 | -- | -- | -- | -- |
| 207.98 | 0.675 | 8.96 | -1.86 | 1.85 | -- | -- | -- | -0.414 | 5.67 | -- | -- | -- | -- |
| 191.08 | 0.644 | 8.97 | -1.68 | -- | 1.92 | -- | -- | -0.291 | -- | 75.26 | 512 | -- | -- |
| 227.07 | 0.702 | 8.93 | -- | 1.67 | 1.71 | -- | -- | -0.0829 | 4.16 | 72 | 1004 | -- | -- |
| 385.01 | 0.917 | 8.99 | -1.8 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 299.09 | 0.809 | 8.92 | -- | 1.82 | -- | -- | -- | -0.207 | 5.71 | -- | -- | -- | -- |
| 264.81 | 0.758 | 8.93 | -- | -- | 2.01 | -- | -- | -0.109 | -- | 75.37 | 532 | -- | -- |
| 470.52 | 1.01 | 8.94 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.92 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 6 | 153.38 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 21 |
| 10 | 153.72 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 22 |
| 25 | 155.63 | humidity | 80 | 720 | < th | dose independent | rect. | 4 | 18 |
| 47 | 156.28 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 56 | 156.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 62 | 156.76 | humidity | 60 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 72 | 156.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 91 | 157.36 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 105 | 157.64 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 130 | 157.98 | humidity | 60 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 131 | 157.99 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 146 | 158.19 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 149 | 158.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 158 | 158.29 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 160 | 158.31 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 161 | 158.31 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 179 | 158.47 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 23 |
| 208 | 158.68 | humidity | 90 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 215 | 158.75 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 222 | 158.80 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 23 |
| 231 | 158.87 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 14 |
| 253 | 159.00 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 15 |
| 260 | 159.04 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 264 | 159.06 | humidity | 80 | 720 | > th | dose independent | rect. | 13 | 23 |
| 272 | 159.11 | humidity | 80 | 720 | < th | dose independent | sin | 21 | NA |
| 296 | 159.26 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 300 | 159.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 313 | 159.34 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 328 | 159.42 | humidity | 90 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 331 | 159.43 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 343 | 159.53 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 362 | 159.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 368 | 159.65 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 377 | 159.70 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 400 | 159.82 | humidity | 60 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 409 | 159.87 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 23 |
| 421 | 159.94 | humidity | 60 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 435 | 160.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 444 | 160.06 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 468 | 160.19 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 528 | 160.42 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 548 | 160.51 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 606 | 160.82 | humidity | 80 | 720 | > th | dose independent | sin | 23 | NA |
| 686 | 161.18 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 700 | 161.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 706 | 161.29 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 736 | 161.38 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 752 | 161.47 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 767 | 161.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 768 | 161.52 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 781 | 161.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 784 | 161.59 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 817 | 161.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 882 | 161.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 902 | 161.97 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 23 |
| 948 | 162.11 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 2 |