BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0790600 Os03g0790600|AK103648
(448 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54720.1 | chr3:20254852-20257815 REVERSE LENGTH=706 449 e-126
AT5G19740.1 | chr5:6673986-6676767 FORWARD LENGTH=682 359 1e-99
AT4G07670.1 | chr4:4462911-4464256 FORWARD LENGTH=281 110 2e-24
>AT3G54720.1 | chr3:20254852-20257815 REVERSE LENGTH=706
Length = 705
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/436 (50%), Positives = 294/436 (67%), Gaps = 11/436 (2%)
Query: 1 MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
+P+S + A I+ +LGG P +W+ N T+Q + KM I ++
Sbjct: 279 LPLSLRNAEIILASLGGARAPLEWRNSGRVGPGQRVGPGRMVI-NMTFQGEMKMKKINNV 337
Query: 61 FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120
I+G EE DRYVILGNHRDAWTYGAVDPNSGTSALLDI+RR ++L+SGW PRRTI+L
Sbjct: 338 VVTIRGSEEADRYVILGNHRDAWTYGAVDPNSGTSALLDISRRFALLLKSGWRPRRTILL 397
Query: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180
CSWDAEEFGMIGSTEW+EEN+ +L + AVAYLNVDCAVQG G FAG+TPQLD LLVDV +
Sbjct: 398 CSWDAEEFGMIGSTEWIEENVLNLGASAVAYLNVDCAVQGSGFFAGATPQLDGLLVDVLK 457
Query: 181 QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGYHT 240
V+DPD G TV +T+ I+RL+R DSDF+ FLHHAGIP +D+YYG ++P YHT
Sbjct: 458 LVQDPDAVGLTVEETFKSQNN--IIQRLSRVDSDFSGFLHHAGIPSIDMYYGADYPVYHT 515
Query: 241 ALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSM 300
A DSY WM + DPLF RHVA+ IWGLL + LAD+P++PFDY +YA QLQ H + S +
Sbjct: 516 AFDSYDWMIHNADPLFHRHVAMAGIWGLLGILLADEPLIPFDYISYADQLQAHRDKLSKL 575
Query: 301 MENSKWVHLLNRSIEDLSDAGLEFLKEAKKLQDQNIS--DGYSXXXXXXXXXXXXXXXXS 358
+E V+ L+ +I++ S E EAKKL+ ++ S D +
Sbjct: 576 LEGKVSVNPLSMAIQEFSLVAKEAADEAKKLKGKSYSKNDVAAAAKRRELNDRLMLVERG 635
Query: 359 FLQADGLQGRGWFKHLMYSPPEDYESKLSFFPGVADAISRSSNRSAKEQQAAVRHEVRKI 418
FL A+G++G+ WFKHL+Y P + ESKL FFPG+ADAI+ +++ + + HE+ ++
Sbjct: 636 FLDAEGIKGKEWFKHLVYGPAAEPESKLGFFPGIADAIAMNAS------EGIIEHEIWRV 689
Query: 419 SRAIQRAADVLRGEFS 434
+RAIQRA+ L+G F+
Sbjct: 690 ARAIQRASKALKGGFT 705
>AT5G19740.1 | chr5:6673986-6676767 FORWARD LENGTH=682
Length = 681
Score = 359 bits (922), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 193/444 (43%), Positives = 271/444 (61%), Gaps = 39/444 (8%)
Query: 1 MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
+PVS A I++T+ G D N +Y + + I+++
Sbjct: 265 LPVSAADAEVILKTVVGDVSDGD----------VYPVGPGPGVLNLSYIGETVIAKIENV 314
Query: 61 FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLDIARRLGIMLQSGWTPRRTIIL 120
+I+G EEPDRYVILGNHRDAWT+GAVDPNSGT+ L++IA+RL + + GW PRRTIIL
Sbjct: 315 IGVIEGEEEPDRYVILGNHRDAWTFGAVDPNSGTAVLMEIAQRLDKLQKRGWKPRRTIIL 374
Query: 121 CSWDAEEFGMIGSTEWVEENLEDLQSKAVAYLNVDCAVQGIGLFAGSTPQLDNLLVDVTR 180
C+WDAEE+G+IGSTEWVEEN E L S+AVAYLNVDCAV G G A +TPQLD L+ +
Sbjct: 375 CNWDAEEYGLIGSTEWVEENREMLSSRAVAYLNVDCAVSGPGFHASATPQLDELIKVAAQ 434
Query: 181 QVKDPDVEGKTVHDTWNKMTGGINIERLARTDSDFAPFLHHAGIPCMDLYYGKEFPGYHT 240
+V+DPD +T++++W + + I RL SD+A F+ H G+P +D+ +G+ +P YH+
Sbjct: 435 EVRDPDNATQTIYESWIGSSDSVVIRRLGGGGSDYASFVQHVGVPGVDMSFGRGYPVYHS 494
Query: 241 ALDSYHWMEKHGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSM 300
D + WMEK GDP+F RHVA+ + GL+ALRLAD+ ++PF+Y +YA +L++ A
Sbjct: 495 MYDDFTWMEKFGDPMFQRHVAMASVLGLVALRLADEEIIPFNYTSYALELKKSAED---- 550
Query: 301 MENSKWVH-----LLNRSIEDLSDAG--LEFLKEAKK--LQDQNISDGYSXXXXXXXXXX 351
+EN K H L +SIEDLS A + KEA K L+ + ++D
Sbjct: 551 LENEKLGHNIDVSTLIKSIEDLSTAAKHISLEKEAIKGALKVRELND------------R 598
Query: 352 XXXXXXSFLQADGLQGRGWFKHLMYSPP--EDYESKLSFFPGVADAISRSSNRSAKEQQA 409
+ DGL R W+KHL+Y P +DY SK FPGV DAI + + K
Sbjct: 599 LMMAERALTDRDGLSERPWYKHLIYGPSKYDDYGSK--SFPGVDDAIDNAKKLNTKASWE 656
Query: 410 AVRHEVRKISRAIQRAADVLRGEF 433
V+H++ ++SRAI+ A+ VL+GE
Sbjct: 657 NVQHQIWRVSRAIRHASLVLKGEL 680
>AT4G07670.1 | chr4:4462911-4464256 FORWARD LENGTH=281
Length = 280
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 30/141 (21%)
Query: 1 MPVSGKTASAIIRTLGGPALPADWQXXXXXXXXXXXXXXXXXXXNFTYQEDRKMGMIQDI 60
+PVS A I++T+ G P N +Y + IQ++
Sbjct: 130 LPVSAADAEVILKTIVGDVGPGP------------------GILNLSYIVTK----IQNV 167
Query: 61 FAIIKGYEEPDRYVILGNHRDAWTYGAVDPNSGTSALLD--------IARRLGIMLQSGW 112
+I+G EEPDRYVIL NHRD WT+ AVDPNSGT+ L++ IA+RL + + GW
Sbjct: 168 IGVIEGEEEPDRYVILRNHRDTWTFRAVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGW 227
Query: 113 TPRRTIILCSWDAEEFGMIGS 133
PRRTIILC+WDAEE+G++ S
Sbjct: 228 KPRRTIILCNWDAEEYGLVSS 248
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,127,115
Number of extensions: 362442
Number of successful extensions: 815
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 3
Length of query: 448
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 346
Effective length of database: 8,310,137
Effective search space: 2875307402
Effective search space used: 2875307402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)