Os01g0743300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protease-associated PA domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0743300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protease-associated PA domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.15 | 0.319 | 8.48 | -0.586 | 1.07 | -0.466 | -0.786 | -0.38 | 0.116 | 23.9 | 22.7 | 1050 | -- | -- |
| 46.65 | 0.318 | 8.48 | -0.67 | 1.08 | -0.462 | -0.65 | -- | 0.111 | 23.8 | 22.6 | 1057 | -- | -- |
| 48.65 | 0.325 | 8.49 | -0.624 | 1.07 | -0.471 | -- | -0.152 | 0.0976 | 23.9 | 22.51 | 1050 | -- | -- |
| 48.69 | 0.325 | 8.49 | -0.676 | 1.07 | -0.476 | -- | -- | 0.102 | 23.9 | 22.4 | 1035 | -- | -- |
| 116.02 | 0.502 | 8.49 | -0.783 | -- | -0.741 | -- | 0.0353 | 0.011 | -- | 22.23 | 889 | -- | -- |
| 56.54 | 0.353 | 8.45 | -0.553 | 1.15 | -- | -0.691 | -- | 0.255 | 23.9 | -- | -- | -- | -- |
| 58.62 | 0.359 | 8.45 | -0.526 | 1.15 | -- | -- | -- | 0.258 | 23.9 | -- | -- | -- | -- |
| 104.27 | 0.476 | 8.46 | -0.828 | -- | -0.944 | -- | -- | 0.0225 | -- | 25.2 | 913 | -- | -- |
| 60.16 | 0.361 | 8.46 | -- | 1.07 | -0.344 | -- | -- | 0.206 | 23.9 | 22.5 | 895 | -- | -- |
| 141.64 | 0.556 | 8.43 | -0.491 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 65.9 | 0.38 | 8.44 | -- | 1.14 | -- | -- | -- | 0.317 | 23.9 | -- | -- | -- | -- |
| 118.63 | 0.507 | 8.48 | -- | -- | -0.823 | -- | -- | 0.0579 | -- | 25.01 | 873 | -- | -- |
| 148 | 0.568 | 8.41 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.23 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 45.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 4 | 45.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 45.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 23 | 45.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 30 | 45.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 44 | 46.04 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 58 | 46.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 75 | 46.20 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 281 | 46.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 300 | 47.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 345 | 47.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 352 | 47.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 362 | 47.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 418 | 47.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 439 | 47.32 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 440 | 47.32 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 480 | 47.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 498 | 47.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 531 | 47.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 552 | 47.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 566 | 47.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 569 | 47.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 586 | 47.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 605 | 47.59 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 637 | 47.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 638 | 47.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 701 | 47.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 705 | 47.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 15 |
| 714 | 47.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 723 | 47.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 791 | 47.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 914 | 47.80 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |