BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0788200 Os03g0788200|AK106623
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0788200  E1 protein and Def2/Der2 allergen family protein    279   7e-76
Os07g0159800  E1 protein and Def2/Der2 allergen family protein    202   9e-53

>Os03g0788200 E1 protein and Def2/Der2 allergen family protein
          Length = 156

 Score =  279 bits (713), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/156 (89%), Positives = 139/156 (89%)

Query: 1   MATDHRRFPVFXXXXXXXXXXXXXXXXXTDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPA 60
           MATDHRRFPVF                 TDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPA
Sbjct: 1   MATDHRRFPVFLAAALLTLLLLPASAAATDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPA 60

Query: 61  TFKISASTDKSITKGKLVIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLPSITP 120
           TFKISASTDKSITKGKLVIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLPSITP
Sbjct: 61  TFKISASTDKSITKGKLVIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLPSITP 120

Query: 121 PGSYTLTMRLLDDGNKELTCISFGFSIGFISPLALI 156
           PGSYTLTMRLLDDGNKELTCISFGFSIGFISPLALI
Sbjct: 121 PGSYTLTMRLLDDGNKELTCISFGFSIGFISPLALI 156



>Os07g0159800 E1 protein and Def2/Der2 allergen family protein
          Length = 152

 Score =  202 bits (514), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 112/128 (87%)

Query: 29  TDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTDKSITKGKLVIDVKYFFFHV 88
           TDVEYC +G+ YPVKVSGVEIVPDPV  G+PATFKISASTDK+I KGKLVIDVKYFFF+V
Sbjct: 25  TDVEYCNKGKKYPVKVSGVEIVPDPVARGEPATFKISASTDKTIGKGKLVIDVKYFFFYV 84

Query: 89  HSESHNLCEETSCPVTGEFVLAHEQTLPSITPPGSYTLTMRLLDDGNKELTCISFGFSIG 148
           HSE+  LC+ TSCP +G+F++AH+QTLPS TPPGSYT+TM++L D ++EL+CISFGFSIG
Sbjct: 85  HSETRELCDVTSCPASGDFLVAHQQTLPSYTPPGSYTITMKMLGDNDEELSCISFGFSIG 144

Query: 149 FISPLALI 156
           F +  A I
Sbjct: 145 FAASEATI 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,103,113
Number of extensions: 191728
Number of successful extensions: 278
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 2
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)