Os07g0159800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : E1 protein and Def2/Der2 allergen family protein.
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Os07g0159800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : E1 protein and Def2/Der2 allergen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.01 | 0.21 | 10.7 | 0.123 | 0.0894 | -0.655 | 0.416 | -1.23 | 0.0948 | 11.2 | 6.845 | 4053 | -- | -- |
| 20.56 | 0.211 | 10.6 | 0.108 | 0.0904 | -0.459 | 0.375 | -- | 0.105 | 10.7 | 6.4 | 4097 | -- | -- |
| 20.63 | 0.212 | 10.7 | 0.132 | 0.0898 | -0.65 | -- | -1.14 | 0.0991 | 11 | 6.785 | 4037 | -- | -- |
| 21.06 | 0.214 | 10.6 | 0.129 | 0.106 | -0.492 | -- | -- | 0.118 | 11 | 6.2 | 4003 | -- | -- |
| 21.12 | 0.214 | 10.7 | 0.141 | -- | -0.637 | -- | -1.1 | 0.0943 | -- | 6.777 | 4096 | -- | -- |
| 24.21 | 0.231 | 10.7 | -0.0455 | 0.0829 | -- | 0.432 | -- | 0.0529 | 11.1 | -- | -- | -- | -- |
| 24.99 | 0.234 | 10.7 | -0.0285 | 0.0834 | -- | -- | -- | 0.054 | 10.3 | -- | -- | -- | -- |
| 21.64 | 0.217 | 10.6 | 0.127 | -- | -0.47 | -- | -- | 0.101 | -- | 6.1 | 4196 | -- | -- |
| 21.46 | 0.216 | 10.6 | -- | 0.0949 | -0.434 | -- | -- | 0.107 | 11.1 | 6.2 | 4003 | -- | -- |
| 25.42 | 0.236 | 10.7 | -0.0298 | -- | -- | -- | -- | 0.0538 | -- | -- | -- | -- | -- |
| 25.01 | 0.234 | 10.7 | -- | 0.0835 | -- | -- | -- | 0.0572 | 10.3 | -- | -- | -- | -- |
| 22 | 0.218 | 10.6 | -- | -- | -0.414 | -- | -- | 0.0903 | -- | 6.3 | 4106 | -- | -- |
| 25.44 | 0.235 | 10.7 | -- | -- | -- | -- | -- | 0.0571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.87 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 2 | 20.00 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 4 | 20.03 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 11 | 20.09 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 13 | 20.09 | wind | 5 | 4320 | > th | dose dependent | rect. | 16 | 10 |
| 22 | 20.15 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 29 | 20.19 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 32 | 20.20 | wind | 7 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 44 | 20.25 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 52 | 20.27 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 61 | 20.29 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 62 | 20.29 | wind | 5 | 4320 | > th | dose dependent | sin | 13 | NA |
| 68 | 20.30 | wind | 7 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 73 | 20.31 | wind | 7 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 77 | 20.31 | wind | 5 | 14400 | > th | dose dependent | sin | 10 | NA |
| 78 | 20.32 | wind | 7 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 106 | 20.35 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 119 | 20.37 | wind | 7 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 123 | 20.38 | wind | 5 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 125 | 20.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 133 | 20.40 | wind | 7 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 137 | 20.41 | wind | 7 | 4320 | < th | dose independent | sin | 14 | NA |
| 155 | 20.44 | wind | 5 | 14400 | > th | dose independent | sin | 11 | NA |
| 169 | 20.45 | temperature | 15 | 270 | > th | dose independent | rect. | 12 | 19 |
| 170 | 20.45 | temperature | 15 | 270 | > th | dose independent | rect. | 11 | 21 |
| 196 | 20.49 | wind | 7 | 4320 | > th | dose independent | sin | 14 | NA |
| 217 | 20.51 | wind | 7 | 14400 | < th | dose independent | sin | 10 | NA |
| 252 | 20.54 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 285 | 20.57 | wind | 7 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 287 | 20.57 | wind | 5 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 290 | 20.58 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 316 | 20.59 | wind | 5 | 4320 | > th | dose dependent | rect. | 1 | 22 |
| 323 | 20.60 | wind | 5 | 4320 | > th | dose dependent | no | NA | NA |
| 325 | 20.60 | wind | 7 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 331 | 20.60 | wind | 5 | 4320 | > th | dose dependent | rect. | 4 | 20 |
| 357 | 20.61 | wind | 5 | 4320 | > th | dose dependent | rect. | 7 | 17 |
| 372 | 20.62 | wind | 5 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 398 | 20.63 | wind | 5 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 446 | 20.65 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 544 | 20.71 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 6 |
| 569 | 20.72 | wind | 7 | 4320 | < th | dose independent | rect. | 8 | 20 |
| 622 | 20.74 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 637 | 20.75 | wind | 7 | 4320 | < th | dose independent | rect. | 8 | 16 |
| 664 | 20.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 675 | 20.76 | wind | 7 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 695 | 20.77 | wind | 7 | 4320 | < th | dose independent | no | NA | NA |
| 754 | 20.78 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 760 | 20.79 | wind | 7 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 794 | 20.80 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 20 |
| 798 | 20.80 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 799 | 20.80 | temperature | 20 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 856 | 20.82 | wind | 7 | 4320 | > th | dose independent | rect. | 7 | 17 |
| 871 | 20.82 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 892 | 20.83 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 15 |
| 923 | 20.84 | wind | 7 | 4320 | > th | dose independent | no | NA | NA |
| 949 | 20.84 | wind | 7 | 4320 | > th | dose independent | rect. | 1 | 22 |