BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0159800 Os07g0159800|AK060475
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11780.2 | chr3:3724326-3725476 REVERSE LENGTH=172 159 5e-40
AT5G06480.1 | chr5:1976219-1977231 REVERSE LENGTH=154 154 2e-38
AT3G44100.1 | chr3:15866162-15867273 REVERSE LENGTH=153 120 2e-28
AT2G16005.1 | chr2:6959347-6960135 REVERSE LENGTH=161 61 2e-10
>AT3G11780.2 | chr3:3724326-3725476 REVERSE LENGTH=172
Length = 171
Score = 159 bits (402), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 97/145 (66%), Gaps = 19/145 (13%)
Query: 25 TDVEYCNKGKKYPVKVSGVEIVPDPVARGEPATFKISASTDKTIGKGKLVIDVKYFFFYV 84
TDV YC+ ++Y VKV GV+I P P+ARGEPATF+ISA+TD I GKLVI+V YF +++
Sbjct: 25 TDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHI 84
Query: 85 HSETRELCDVTSCP-ASGDFLVAHQQTLPSYTPP------------------GSYTITMK 125
HSET +LCD TSCP A GDFLVAH Q LP YTPP GSY++ MK
Sbjct: 85 HSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVEGSYSLKMK 144
Query: 126 MLGDNDEELSCISFGFSIGFAASEA 150
ML +EL+CI F F IGF +S A
Sbjct: 145 MLDGRKKELTCIKFSFDIGFGSSVA 169
>AT5G06480.1 | chr5:1976219-1977231 REVERSE LENGTH=154
Length = 153
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
Query: 26 DVEYCNKGKKYPVKVSGVEIVPDPVARGEPATFKISASTDKTIGKGKLVIDVKYFFFYVH 85
DV YC + +Y VKV V+I P+P+A GEPATF ISA+T + I GKLVI+V YF ++VH
Sbjct: 26 DVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVH 85
Query: 86 SETRELCDVTSCP-ASGDFLVAHQQTLPSYTPPGSYTITMKMLGDNDEELSCISFGFSIG 144
SET +LC TSCP +GDFLVAH Q LP YTPPGSY + MKML +EL+CI F F IG
Sbjct: 86 SETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDIG 145
Query: 145 FAASEATI 152
AS A I
Sbjct: 146 LRASVADI 153
>AT3G44100.1 | chr3:15866162-15867273 REVERSE LENGTH=153
Length = 152
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 25 TDVEYCNKGKKYPVKVSGVEIVPDPVARGEPATFKISASTDKTIGKGKLVIDVKYFFFYV 84
T YC+K + PVKV+GV+I PDPV G ATFKI ST + I GK+VI V Y V
Sbjct: 25 TSFTYCDK-RLDPVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPV 83
Query: 85 HSETRELCDVTSCP-ASGDFLVAHQQTLPSYTPPGSYTITMKMLGDNDEELSCISFGFSI 143
H+ET +LCD T+CP A G F+++H QTLPS TPPG+YT+ M + N L+CISF F I
Sbjct: 84 HTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKI 143
>AT2G16005.1 | chr2:6959347-6960135 REVERSE LENGTH=161
Length = 160
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 28 EYCNKGKKYPVKVSGVEIVPDPVARGEPATFKISASTDKTIGKGKLV-IDVKYFFFYVHS 86
+ C+ GK+YP+KVS VEI PDPV R I+ T+K I G V + + F V +
Sbjct: 28 QTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNKEISDGVTVNLKLAVGMFPVST 87
Query: 87 ETRELCDVTSCPASGDFLVAHQQTLPSYTPPGS------YTITMKMLGDN-DEELSCISF 139
++ LCD+T+CP + +V TLP+ P YTI + + E + CI F
Sbjct: 88 KSYSLCDITACPVAPGPIVL---TLPNIFTPREKRTAIGYTIIISITDKPLKESMMCILF 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,024,172
Number of extensions: 117746
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)