Os03g0788200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : E1 protein and Def2/Der2 allergen family protein.
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Os03g0788200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : E1 protein and Def2/Der2 allergen family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.09 | 0.361 | 10.9 | -1.28 | 1.11 | -1.3 | 0.993 | 0.144 | -0.544 | 11.3 | 5.485 | 1441 | -- | -- |
| 58.75 | 0.357 | 10.9 | -1.28 | 1.09 | -1.34 | 1.03 | -- | -0.536 | 11.3 | 5.032 | 1453 | -- | -- |
| 62.44 | 0.368 | 10.9 | -1.22 | 1 | -1.45 | -- | -0.292 | -0.536 | 11.4 | 4.55 | 1469 | -- | -- |
| 62.52 | 0.368 | 10.9 | -1.24 | 0.982 | -1.44 | -- | -- | -0.539 | 11.4 | 4.74 | 1472 | -- | -- |
| 89.84 | 0.444 | 10.9 | -1.07 | -- | -0.888 | -- | -0.53 | -0.334 | -- | 6.208 | 18 | -- | -- |
| 92 | 0.45 | 10.8 | -1.08 | 1.11 | -- | 0.777 | -- | -0.302 | 11.3 | -- | -- | -- | -- |
| 94.55 | 0.455 | 10.8 | -1.05 | 1.11 | -- | -- | -- | -0.299 | 11.4 | -- | -- | -- | -- |
| 91.5 | 0.447 | 10.9 | -1.06 | -- | -0.891 | -- | -- | -0.332 | -- | 6.391 | 25 | -- | -- |
| 96.8 | 0.458 | 10.9 | -- | 0.933 | -1.22 | -- | -- | -0.438 | 11.3 | 9.72 | 1523 | -- | -- |
| 171.75 | 0.612 | 10.9 | -1.08 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 123.65 | 0.52 | 10.8 | -- | 1.12 | -- | -- | -- | -0.182 | 11.4 | -- | -- | -- | -- |
| 120.73 | 0.513 | 10.8 | -- | -- | -0.906 | -- | -- | -0.21 | -- | 7.322 | 1627 | -- | -- |
| 202.48 | 0.664 | 10.8 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 4 | 58.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 38 | 59.57 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 45 | 59.72 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 57 | 59.93 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 60 | 59.97 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 91 | 60.54 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 96 | 60.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 97 | 60.66 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 115 | 60.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 136 | 61.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 138 | 61.01 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 141 | 61.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 171 | 61.14 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 178 | 61.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 197 | 61.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 217 | 61.35 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 309 | 61.42 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 8 |
| 318 | 61.48 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 348 | 61.68 | humidity | 60 | 1440 | > th | dose dependent | sin | 0 | NA |
| 470 | 62.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 481 | 62.18 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 500 | 62.30 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 522 | 62.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 684 | 62.97 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 786 | 63.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 834 | 63.29 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 884 | 63.34 | humidity | 60 | 1440 | > th | dose dependent | rect. | 19 | 22 |