BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0788200 Os03g0788200|AK106623
(156 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06480.1 | chr5:1976219-1977231 REVERSE LENGTH=154 154 1e-38
AT3G11780.2 | chr3:3724326-3725476 REVERSE LENGTH=172 154 2e-38
AT3G44100.1 | chr3:15866162-15867273 REVERSE LENGTH=153 135 9e-33
AT2G16005.1 | chr2:6959347-6960135 REVERSE LENGTH=161 64 4e-11
>AT5G06480.1 | chr5:1976219-1977231 REVERSE LENGTH=154
Length = 153
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Query: 30 DVEYCRQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTDKSITKGKLVIDVKYFFFHVH 89
DV YC + +Y VKV V+I P+P+ G+PATF ISA+T + I+ GKLVI+V YF +HVH
Sbjct: 26 DVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLVIEVSYFGWHVH 85
Query: 90 SESHNLCEETSCPV-TGEFVLAHEQTLPSITPPGSYTLTMRLLDDGNKELTCISFGFSIG 148
SE+H+LC ETSCP+ TG+F++AH Q LP TPPGSY L M++LD KELTCI F F IG
Sbjct: 86 SETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKELTCIKFSFDIG 145
Query: 149 FISPLALI 156
+ +A I
Sbjct: 146 LRASVADI 153
>AT3G11780.2 | chr3:3724326-3725476 REVERSE LENGTH=172
Length = 171
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 96/145 (66%), Gaps = 19/145 (13%)
Query: 29 TDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTDKSITKGKLVIDVKYFFFHV 88
TDV YC +Y VKV GV+I P P+ G+PATF+ISA+TD I+ GKLVI+V YF +H+
Sbjct: 25 TDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIEVSYFGWHI 84
Query: 89 HSESHNLCEETSCPVT-GEFVLAHEQTLPSITPP------------------GSYTLTMR 129
HSE+H+LC+ETSCPV G+F++AH Q LP TPP GSY+L M+
Sbjct: 85 HSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVEGSYSLKMK 144
Query: 130 LLDDGNKELTCISFGFSIGFISPLA 154
+LD KELTCI F F IGF S +A
Sbjct: 145 MLDGRKKELTCIKFSFDIGFGSSVA 169
>AT3G44100.1 | chr3:15866162-15867273 REVERSE LENGTH=153
Length = 152
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 85/120 (70%), Gaps = 2/120 (1%)
Query: 29 TDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTDKSITKGKLVIDVKYFFFHV 88
T YC + D PVKV+GV+I PDPVVSG ATFKI ST + I+ GK+VI V Y V
Sbjct: 25 TSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVLYVGIPV 83
Query: 89 HSESHNLCEETSCPVT-GEFVLAHEQTLPSITPPGSYTLTMRLLDDGNKELTCISFGFSI 147
H+E+H+LC+ET+CPV G FVL+H QTLPSITPPG+YTL M + D LTCISF F I
Sbjct: 84 HTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISFKFKI 143
>AT2G16005.1 | chr2:6959347-6960135 REVERSE LENGTH=161
Length = 160
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 32 EYCRQGRDYPVKVSGVEIVPDPVVSGQPATFKISASTDKSITKGKLV-IDVKYFFFHVHS 90
+ C G++YP+KVS VEI PDPV I+ T+K I+ G V + + F V +
Sbjct: 28 QTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNKEISDGVTVNLKLAVGMFPVST 87
Query: 91 ESHNLCEETSCPVT-GEFVLAHEQTLPSITPPG------SYTLTMRLLDDGNKE-LTCIS 142
+S++LC+ T+CPV G VL TLP+I P YT+ + + D KE + CI
Sbjct: 88 KSYSLCDITACPVAPGPIVL----TLPNIFTPREKRTAIGYTIIISITDKPLKESMMCIL 143
Query: 143 F 143
F
Sbjct: 144 F 144
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,288,627
Number of extensions: 126861
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)