BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0787100 Os03g0787100|AK110858
         (123 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0787100  Conserved hypothetical protein                      188   7e-49
Os03g0647800  Conserved hypothetical protein                      114   1e-26

>Os03g0787100 Conserved hypothetical protein
          Length = 123

 Score =  188 bits (478), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 96/123 (78%)

Query: 1   MAVATLXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDTNGVYEPCADAAVQRGDGFTFGVA 60
           MAVATL                           GGDTNGVYEPCADAAVQRGDGFTFGVA
Sbjct: 1   MAVATLSSRSRRACAEAASVLLVLLVIAPSVAAGGDTNGVYEPCADAAVQRGDGFTFGVA 60

Query: 61  FAARGDFFSGGVQLSPCDGRLSLASKGAKLAVFRPEVDEISLLTVNTSAAGGFDPMVYTH 120
           FAARGDFFSGGVQLSPCDGRLSLASKGAKLAVFRPEVDEISLLTVNTSAAGGFDPMVYTH
Sbjct: 61  FAARGDFFSGGVQLSPCDGRLSLASKGAKLAVFRPEVDEISLLTVNTSAAGGFDPMVYTH 120

Query: 121 EEP 123
           EEP
Sbjct: 121 EEP 123



>Os03g0647800 Conserved hypothetical protein
          Length = 263

 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 68/81 (83%), Gaps = 4/81 (4%)

Query: 36  DTNGVYEPCADAAVQRGDGFTFGVAFAARGDFFSGG-VQLSPCDGRLSLASKGAKLAVFR 94
           D NGVY+PC+D  +QRGDGF+FG+AFA  G F+SGG VQLSPCD RLSLAS G +LAVFR
Sbjct: 48  DENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASSG-QLAVFR 106

Query: 95  PEVDEISLLTVNTSAAGGFDP 115
           P+VDEISLLT+NT+   GF+P
Sbjct: 107 PKVDEISLLTINTTT--GFNP 125



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,447,694
Number of extensions: 134655
Number of successful extensions: 222
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 2
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)